CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTATCATAGCAATCCTAAGCACATTTCCTTCTTTTATAATGTCT
AAATTATCTAACATTGTCACCTGACAAACTATCTCACTGGGACTCAAATT
TTCACTTATTTTATATATATATTACTTTATGTACATCCCAGACTTAGTTG
TTTTTTTGGGGGGCGGGGGGAGATGAGACAGGGTTTCCCTGTATAGCCCT
GGCTGTCCTGGAACTCACTTTTGTAGACCAGGCTGGCCTCGAACTCAGAA
ATCCACCTGCCTCTGCCTCCGGAGTGCTGGGATTAAAGGCGTGCGCCACC
ACCGCCTGGCCCAGACTTAGTTTTAACCTACATCATAGCCTTTAGGGTTT
CTTTGGTTTTTTTGTTTGTTTGGTTTTTGTATTTGATTCATTTTAGTTAT
TAGCTTGGAGTTCTTGCCGCTCTCTCATTTTTCAGAAATGAGGGCGAGTG
TTGACGGCATGACTACTAACTGGGAAATGAAGACTTTTTATATTTTTTAT
ACTTTATCATTTAAGTGGCAGATCTAATATTTGAACCTAGATCTCTATCA
TAATATTGATTTTTACCACAGCTATATATTATGTCTGCTTCAGGACACAA
CTGAACAAAAGTTAAGTTTTTTTTCAGTATATGATCAAGTTGAGTAATCA
GAGTAGGTCTTCN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCACTAAAACTGTCTAGTGCTGGGCTT
GTTTTGGTTTGGAGACTTTTAATGATGGCTTCTATATGCTTAGGTGGTAT
AGGTCTATATGTTTATCTGATCAGGATTTAACTTTGTTAAGTGGTATCTA
TAAAGAAAATTGTCCCTTTCTTTTTTATTTCAAATTTTGTGGAGTACAGA
TTTTTGAAGTATAGCTTAATGATTCTTTGGATTTCCTTAGTATCTGTTGT
TATGCGCCCCCCCCCAATTTCATTTAGGATTTTTAATTTGGATATTGTCT
CTCTGCCTTTCAGTTAGTTTGGATAAGGGGTTGTCTATCCTGATGATTTT
TTTCGAAGAACAAACTCTTTGTTACATTGATTCTCTGTTTCTGTTTCATT
GATTTCAGCTCAGAGAGTGATTATTTCCTGTTCTTCTTGGGCATGTTTGC
TTCTTTTTGTTCTACAGCTTTCAGGTGTGCTGTATAGTTAGTAATATGAG
AGCTCATAATTTCTTTATGAATGCACTTAGTGCTATGAACTTTCTTCTTA
GCATTGCTTTCATTGTGTCCAAGTTTAGGTATTTGGGTATTTATTTTATT
GAATTCTAAGGCCCTTTAATTTCTTTCTCTAGAAGACTTTCTATAATAAA
ATCCTTTAAGCCTTT

Query= MSMg01no334_p11.b1 MSMg01no334_p11.b1 CHROMAT_FILE:
MSMg01no334_p11.b1 PHD_FILE: MSMg01no334_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:34 2005
         (524 letters)



>mm_chr1_107561991_107562914
          Length = 924

 Score =  899 bits (465), Expect = 0.0
 Identities = 509/529 (96%), Gaps = 11/529 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctatcatagcaatcctaagcacatttccttcttttataatgtctaaattatct 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gaattctctatcagagtaatcctaagcacatttccttcttttataatgtctaaattatct 257

                                                                       
Query: 65  aacattgtcacctgacaaactatctcactgggactcaaattttcacttattttatatata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aacattgtcacctgacaaactatctcactgggactcaaattttcacttattttatatata 317

                                                                       
Query: 125 tattactttatgtacatcccagacttagttgtttttttggggggcgggggg---agatga 181
           |||||||||||||||||||||||||||||||  ||||||||||| ||||||   ||||||
Sbjct: 318 tattactttatgtacatcccagacttagttg--tttttgggggggggggggggaagatga 375

                                                                       
Query: 182 gacagggtttccctgtatagccctggctgtcctggaactcacttttgtagaccaggctgg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gacagggtttccctgtatagccctggctgtcctggaactcacttttgtagaccaggctgg 435

                                                                       
Query: 242 cctcgaactcagaaatccacctgcctctgcctccg------gagtgctgggattaaaggc 295
           ||| |||||||||||||||||||||||||||||||       ||||||||||| ||||||
Sbjct: 436 ccttgaactcagaaatccacctgcctctgcctccgcctcccaagtgctgggatcaaaggc 495

                                                                       
Query: 296 gtgcgccaccaccgcctggcccagacttagttttaacctacatcatagcctttagggttt 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gtgcgccaccaccgcctggcccagacttagttttaacctacatcatagcctttagggttt 555

                                                                       
Query: 356 ctttggtttttttgtttgtttggtttttgtatttgattcattttagttattagcttggag 415
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 556 ctttggtttttttgtttgtttggtttttgtatttgattcgttttagttattagcttggag 615

                                                                       
Query: 416 ttcttgccgctctctcatttttcagaaatgagggcgagtgttgacggcatgactactaac 475
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 616 ttcttgccgctctctcatttttcagaaatgagggggagtgttgacggcatgactactaac 675

                                                            
Query: 476 tgggaaatgaagactttttatattttttatactttatcatttaagtggc 524
           ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 676 tgggaaatgaagactttttatattttttatattttatcatttaagtggc 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)