BAC Information

Click to search

BAC

Clone NameMSMg01-335G09
Chromosome1 (Build37)
Map Location 161,680,531 - 161,865,191
singlet/doubletdoublet
Overlap geneTnr
Upstream genePappa2, 4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484
Downstream gene4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l, Gpr52, EG620750, Rc3h1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335G09.T7 (MSMg01no335_g09.b1)MSMg01-335G09.TJ (MSMg01no335_g09.g1)
ACCAG450663AG450664
length683762
length of high quality
(start - end)
106 (365 - 470)133 (80 - 212)
definitionCHROMAT_FILE: MSMg01no335_g09.b1 PHD_FILE: MSMg01no335_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:09 2005CHROMAT_FILE: MSMg01no335_g09.g1 PHD_FILE: MSMg01no335_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,680,531 - 161,680,636)(161,865,059 - 161,865,191)
sequence
AATTTGCGGCGCTATACGACTCCTATGTGCANAGATCCGCGGAATTCTCT
TCCTTACGACAGCTCACCTGTATGCACCCCTGCCCTGGGATACTCTGCTC
ATAGCCACCAAGGAAGCTTTCTGAACCCCGCGTATGACTGCACTACTTTC
TTAGCTCTCTCCAATTTCCTTCATATCCAATATCCTTGCTGTTCTAACAA
GTCACACACAACAACTGGGGATCGGGCTTCTTAACTTTCTAGCCTGATCT
CCTAATAGTCACTTAGTGGAGTATACACTTTGGCTCGCCCAATCCTGAGT
AGTTGTTTTCTCTCACAAAACTATGCTCTATCCCCTGCAGGAACTCCTGC
TTGAACTGAATCCTCATCTGTAAAGGTTATCTCAAACATTGCCTCCCCTT
CTCTGACTCCTTCTCTACCCTATTCTTGGATTGAATTAGGACTTTCCTCC
TTGATTCCTGAGCACCCGGGAGCAAAACTCCAGTATTGATCTGAGCACTT
GGTACTGTAACCCTCGGAACATAAGTCTTTCTTTTCTAATATCCCGACAG
CTCTTTGGCATTGAAACATCCTATCATTTTACCCCTTACTTCTTTGCTGC
TACCCATGTGTCAAATGCCTATTTATTGCACGATCAACGACACATCCTCG
TTTGTTGTATACCAATTCTTTGATTGACCACTG
GTCGCAATACAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACCGCATGTCTTTTTCC
AGTTCCCCATGAACACATAAACATAAGTTTGGAAATTTTTTGCTCTATTT
CATTTGACAAGCCTTGATGGGACTCACTTATGTATGGACTACCTGGATCA
GAAAGAAGGGATTTCAGTATAAATGAGCAGAGAAGGAAAGAGGCAAAAAG
AGAGTAAATGTTTGACCTGCTAAACTTTCATCTGCACTATGATGTTCCCA
TGACAGGATGCGCGTGCGTGTGTGTACGTGTGTGTATGGATACTCATCAG
TACAATATTCCGACTAGGGCATTGTGTTTCCTGTGGTTGGAGCTACCTCC
GCCGTTGTGACATGCCCAATGTGTGTGCCGGTAACTGACCTCACGTTAAA
AACTTCACCACCATATATGCTTTATGATGTGCCTCTTCTGCCTGTAGTCT
TCTTTTTGTTACTTCAAAGCCTCTATTTGTGTCCCTCTTTTAACGCTCAA
TGTTCCTCACCGTCTTTCATCGCATTTTTTCTTTCCCATTGTTATTTCCC
CCCTTCCTTTTTCTTTCCTCCTTCTTTTTCCTTCTATTGCCTTCTCCCTC
CATTTTTCCCCGTTTTATTCCCCCCCCCCCCCCTTATTTACTTCCTGCAT
TTTACCCCTTCCTTTACACCCTCCCCTTCCACTTTTTTCTTTTCTAATCC
CCCCCCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_g09.b1 MSMg01no335_g09.b1 CHROMAT_FILE:
MSMg01no335_g09.b1 PHD_FILE: MSMg01no335_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:09 2005
         (106 letters)



>mm_chr1_161680331_161680836
          Length = 506

 Score =  197 bits (102), Expect = 1e-55
 Identities = 105/106 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctgtaaaggttatctcaaacattgcctccccttctctgactccttctctaccctatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catctgtaaaggttatctcaaacattgcctccccttctctgactccttctctaccctatt 260

                                                         
Query: 61  cttggattgaattaggactttcctccttgattcctgagcacccggg 106
           |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 cttggattgaattaggactttcctccatgattcctgagcacccggg 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 506
Length adjustment: 8
Effective length of query: 98
Effective length of database: 498
Effective search space:    48804
Effective search space used:    48804
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
Query= MSMg01no335_g09.g1 MSMg01no335_g09.g1 CHROMAT_FILE:
MSMg01no335_g09.g1 PHD_FILE: MSMg01no335_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:09 2005
         (133 letters)



>mm_chr1_161864859_161865391
          Length = 533

 Score =  250 bits (129), Expect = 3e-71
 Identities = 132/133 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcaccgcatgtctttttccagttccccatgaacacataaacataagtttggaaatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tttcaccgcatgtctttttccagttccccatgaacacataaacataagtttggaaatttt 274

                                                                       
Query: 61  ttgctctatttcatttgacaagccttgatgggactcacttatgtatggactacctggatc 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 273 ttgctctatttcatttgacaagccttgaggggactcacttatgtatggactacctggatc 214

                        
Query: 121 agaaagaagggat 133
           |||||||||||||
Sbjct: 213 agaaagaagggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 133
Length of database: 533
Length adjustment: 8
Effective length of query: 125
Effective length of database: 525
Effective search space:    65625
Effective search space used:    65625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)