Query= MSMg01no335_l11.b1 MSMg01no335_l11.b1 CHROMAT_FILE:
MSMg01no335_l11.b1 PHD_FILE: MSMg01no335_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:34 2005
(339 letters)
>mm_chr1_70540864_70541602
Length = 739
Score = 656 bits (339), Expect = 0.0
Identities = 339/339 (100%)
Strand = Plus / Minus
Query: 1 aacacaaaaccagttttaacaaacacacagcaattatcttatggctccagaattattctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aacacaaaaccagttttaacaaacacacagcaattatcttatggctccagaattattctt 480
Query: 61 ggtaaaccacggaattaatatgaactattttttttaaatgaagcatttttcttcttatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ggtaaaccacggaattaatatgaactattttttttaaatgaagcatttttcttcttatat 420
Query: 121 gtttatttcttcctttacaactgaagtttagtcatattaaaattttaattgattacaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gtttatttcttcctttacaactgaagtttagtcatattaaaattttaattgattacaaat 360
Query: 181 aaagactgaggaattctcaaaagttcaaaaatcttaaatacgcatcactatcaaagggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aaagactgaggaattctcaaaagttcaaaaatcttaaatacgcatcactatcaaagggaa 300
Query: 241 gatatactgtgcgtccctcatttcacagagtctaccactaaagatggtgaagcagtcgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gatatactgtgcgtccctcatttcacagagtctaccactaaagatggtgaagcagtcgta 240
Query: 301 ctttaatcttctaagtcaacaattgaaatcaatttactt 339
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ctttaatcttctaagtcaacaattgaaatcaatttactt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_l11.g1 MSMg01no335_l11.g1 CHROMAT_FILE:
MSMg01no335_l11.g1 PHD_FILE: MSMg01no335_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:34 2005
(270 letters)
>mm_chr1_70409902_70410568
Length = 667
Score = 427 bits (221), Expect = e-124
Identities = 255/267 (95%), Gaps = 5/267 (1%)
Strand = Plus / Plus
Query: 1 tttttatcaccaacataacatttttattttcaggaaccatttctatagctcattactaaa 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tttttatcaccaacataacatttttattttcagggaccatttctatagctcattactaaa 260
Query: 61 atgtatttttaattagaatattaaagttgtatcttatagatacaactttagagtatagat 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 atgtatttttaattagaatattaaagttgtatcttatagataca-ctttagagtatagat 319
Query: 121 gtaactttagagttaaaaggaaaattaattcaattcatacttaaagaattttttaatatt 180
|||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 320 gtaactttagagctaaaaggaaaattaattaaattcattcttaaagaattttttaatatt 379
Query: 181 aaagatttatagttatggttctaacttaactctaggtgagcatgtgtgtgtgtgtgagag 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 380 aaagatttatagttatggttctaac--aactctaggtgagcatgtgtgtgtgtgtgagtg 437
Query: 241 agtatgta-tgtgtgtgtgtgtgtgtg 266
||||| | ||||||||| ||||||||
Sbjct: 438 tgtatg-agtgtgtgtgtatgtgtgtg 463
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 667
Length adjustment: 9
Effective length of query: 261
Effective length of database: 658
Effective search space: 171738
Effective search space used: 171738
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
