Query= MSMg01no335_l20.b1 MSMg01no335_l20.b1 CHROMAT_FILE:
MSMg01no335_l20.b1 PHD_FILE: MSMg01no335_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:36 2005
(565 letters)
>mm_chr1_93460895_93461859
Length = 965
Score = 1064 bits (550), Expect = 0.0
Identities = 562/566 (99%), Gaps = 2/566 (0%)
Strand = Plus / Plus
Query: 1 ttgatttttggaggaccacctgctgaggccctggggtgcgggtatcttaccctgggcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgatttttggaggaccacctgctgaggccctggggtgcgggtatcttaccctgggcctt 260
Query: 61 ggaggctccctgaggtgcccttctctctcccagaccctggatcttaggtctggcttcaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaggctccctgaggtgcccttctctctcccagaccctggatcttaggtctggcttcaca 320
Query: 121 cccagcagcctgagaggggcctcttggaaaatgtgcattcgtgcttttgaaatcccaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccagcagcctgagaggggcctcttggaaaatgtgcattcgtgcttttgaaatcccaagc 380
Query: 181 gggctgtgcatgctgcttcggaagaagtgactgtggttccgagccaagttgtggtgagca 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 gggctgtgcatgctgcttcggaaggagtgactgtggttccgagccaagttgtggtgagca 440
Query: 241 gtgcactctgagctcccttcaagggaccctggggtcagctgggaggggtcttactccacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgcactctgagctcccttcaagggaccctggggtcagctgggaggggtcttactccacc 500
Query: 301 caagagctcgaatttcagggcttgtgaaatgcaatgggaattccaggtgtgtgagaacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagagctcgaatttcagggcttgtgaaatgcaatgggaattccaggtgtgtgagaacaa 560
Query: 361 gctggttttgctgtgagaagctttgcaggcaggca-agcaagtcctaccaagtccagctt 419
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 561 gctggttttgctgtgagaagctttgcaggcagg-agagcaagtcctaccaagtccagctt 619
Query: 420 gctccctttgcatctactgctctaggcacttgggaaggcacctagtcccatcccagcaaa 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 620 gctccctttgcatctactgctctaggcacttgggaaggcacctagtcccatccccgcaaa 679
Query: 480 tgcatccctgactacttgcatctctctcccttagccatggtttctgggggctacttccct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgcatccctgactacttgcatctctctcccttagccatggtttctgggggctacttccct 739
Query: 540 ttcctgtgtctcttctgcacgttggt 565
||||||||||||||||||||||||||
Sbjct: 740 ttcctgtgtctcttctgcacgttggt 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_l20.g1 MSMg01no335_l20.g1 CHROMAT_FILE:
MSMg01no335_l20.g1 PHD_FILE: MSMg01no335_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:36 2005
(562 letters)
>mm_chr1_93609547_93610508
Length = 962
Score = 1050 bits (543), Expect = 0.0
Identities = 558/563 (99%), Gaps = 2/563 (0%)
Strand = Plus / Minus
Query: 1 taggtaaggtgtcttctaaccaaaatgaaagtcagccacacactaataatgtca-tcccc 59
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 762 taggtaaggtgtcttccaaccaaaatgaaagtcagccacacactaataatgtcattcccc 703
Query: 60 ccccccaaatatttgaaaatcaaaggaaaatgaatataaataacttttggatcaaagggg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ccccccaaatatttgaaaatcaaaggaaaatgaatataaataacttttggatcaaagggg 643
Query: 120 ggaaaatgacacaggaaatgacaaaaatgcttgtagctgcctgattgatgaaacccttgt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ggaaaatgacacaggaaatgacaaaaatgcttgtagctgcctgattgatgaaacccttgt 583
Query: 180 gacagggagtgttgggggggcaggggaatttaagcattcgattctttaaaaagagtggct 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gacagggagtgtt-ggggggcaggggaatttaagcattcgattctttaaaaagagtggct 524
Query: 240 agctaaactcgatgatcgcagcttctgcccagaactcactgcgttctatcccatctctag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agctaaactcgatgatcgcagcttctgcccagaactcactgcgttctatcccatctctag 464
Query: 300 ggcagaagtgtcttacattgctcacagtgccgcagggctcagactgtggccactcagcct 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ggcagaagtgtcttacattgctcacagtgccgcagggctcagactgtggccactcagccc 404
Query: 360 gtgtgcttgggcagaacaacactacggtggggatgtgttacagaggctgcggctcactcc 419
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 403 gtgtgcttgggcagaacaacactacggtggggatgtgttacagaggctggggctcactcc 344
Query: 420 atggcaaccagaaaacagagagcaagacaggaaggagtcatggatactatgtcccctctg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 atggcaaccagaaaacagagagcaagacaggaaggagtcatggatactatgtcccctctg 284
Query: 480 aagagttcatcaggcagtctgctaggtgactgatcactctcaagtcccaaatgactacat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aagagttcatcaggcagtctgctaggtgactgatcactctcaagtcccaaatgactacat 224
Query: 540 atgtaaggtttggagcctaaatc 562
|||||||||||||||||||||||
Sbjct: 223 atgtaaggtttggagcctaaatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
