Query= MSMg01no335_o02.b1 MSMg01no335_o02.b1 CHROMAT_FILE:
MSMg01no335_o02.b1 PHD_FILE: MSMg01no335_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:47 2005
(566 letters)
>mm_chr1_65784668_65785633
Length = 966
Score = 1065 bits (551), Expect = 0.0
Identities = 560/563 (99%), Gaps = 2/563 (0%)
Strand = Plus / Plus
Query: 5 gaattctctt-tatactaactcattgtttactttcatttgttctcatacattctacatcc 63
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttcaatactaactcattgtttactttcatttgttctcatacattctacatcc 264
Query: 64 aaattgctctagagttttccatgttacagagacactgtaagtatcacagggaggtgatgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaattgctctagagttttccatgttacagagacactgtaagtatcacagggaggtgatgt 324
Query: 124 gtaatataggaacagttagatgaagaaagagttcagtgaagttttcaaagaccaaggaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtaatataggaacagttagatgaagaaagagttcagtgaagttttcaaagaccaaggaag 384
Query: 184 aatgggtgaaaacagcaacactatgcccaaacacaggactgagtggacaagtcatgcttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatgggtgaaaacagcaacactatgcccaaacacaggactgagtggacaagtcatgcttt 444
Query: 244 aagtgaagtatggaggacatgggtagcagagctgtgaatatttctgtgtgtctataaaac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagtgaagtatggaggacatgggtagcagagctgtgaatatttctgtgtgtctataaaac 504
Query: 304 taccatcttggtgcacaataactttatgatagtcatttccacactaattgtacatttcct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taccatcttggtgcacaataactttatgatagtcatttccacactaattgtacatttcct 564
Query: 364 gttcaagttctttttttttttttgtaattaaacataaatccaaagacaaaatgggaatgg 423
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gttcaagttc-ttttttttttttgtaattaaacataaatccaaagacaaaatgggaatgg 623
Query: 424 gttttgaggaacatgacaagattagagtggtggtgtagaggtgaccacacacagtctagc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gttttgaggaacatgacaagattagagtggtggtgtagaggtgaccacacacagtctagc 683
Query: 484 acaagttcctgagggctgttgtctactacacagaagaacctcagactcttgatatttcaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acaagttcctgagggctgttgtctactacacagaagaacctcagactcttgatatttcaa 743
Query: 544 taatgttttgctatgtttacata 566
|||||||||||||||||||||||
Sbjct: 744 taatgttttgctatgtttacata 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_o02.g1 MSMg01no335_o02.g1 CHROMAT_FILE:
MSMg01no335_o02.g1 PHD_FILE: MSMg01no335_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:47 2005
(305 letters)
>mm_chr1_65971756_65972460
Length = 705
Score = 582 bits (301), Expect = e-171
Identities = 304/305 (99%)
Strand = Plus / Minus
Query: 1 agtttggagatctctgctaagggtttctaaatagttctccgtagccattatttagctatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtttggagatctctgctaagggtttctaaatagttctccgtagccattatttagctatg 446
Query: 61 aattaaaggcttactggtttgtttattttagagatcatgatgagtgtatgcggttacatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattaaaggcttactggtttgtttattttagagatcatgatgagtgtatgcggttacatg 386
Query: 121 ctgttaaaacttccactcccctgccagccttctaacgacagagctttgtgctaagcacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgttaaaacttccactcccctgccagccttctaacgacagagctttgtgctaagcacaa 326
Query: 181 tccttttgaaataaattcttccaagagactgaaaacaaataacttattagaggctgaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tccttttgaaataaattcttccaagagactgaaaacaaataacttattagaggctgaatg 266
Query: 241 tcaggtcctcttacaaagtcaagctgttcctccctgcttagctacagcctcagcccttaa 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcagggcctcttacaaagtcaagctgttcctccctgcttagctacagcctcagcccttaa 206
Query: 301 cgatt 305
|||||
Sbjct: 205 cgatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space: 206016
Effective search space used: 206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
