Query= MSMg01no335_o10.b1 MSMg01no335_o10.b1 CHROMAT_FILE:
MSMg01no335_o10.b1 PHD_FILE: MSMg01no335_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:49 2005
(275 letters)
>mm_chr1_127193145_127193819
Length = 675
Score = 485 bits (251), Expect = e-142
Identities = 264/269 (98%), Gaps = 2/269 (0%)
Strand = Plus / Minus
Query: 5 gaattctaagttcattcagataccctgcttcaaaaataacataaagaagatgtgaggaag 64
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gaattctaagttcagtaagataccctgcttcaaaaataacataaagaagatgtgaggaag 317
Query: 65 atacgtgacacccatctctgttctctgcatagccatgaacatatgaacacacatctcctc 124
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 atacttgacacccatctctgttctctgcatagccatgaacatatgaacacacatctcctc 257
Query: 125 ctgcctctccatcaacagagaaatacatggaaatgcacgtgtgcttgcgaatacacacac 184
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 256 ctgcctctccatcaacagagaaatacatggaaatgcacgtgtgcttgcgaat--acacac 199
Query: 185 acacacacacacacacacacacacacacacacacacacacacacagagagagagagagag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 acacacacacacacacacacacacacacacacacacacacacacagagagagagagagag 139
Query: 245 agagagagagagagagagagagagaaaga 273
|||||||||||||||||||||||||||||
Sbjct: 138 agagagagagagagagagagagagaaaga 110
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 95
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space: 177156
Effective search space used: 177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no335_o10.g1 MSMg01no335_o10.g1 CHROMAT_FILE:
MSMg01no335_o10.g1 PHD_FILE: MSMg01no335_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:49 2005
(562 letters)
>mm_chr1_126997088_126998049
Length = 962
Score = 1071 bits (554), Expect = 0.0
Identities = 560/562 (99%)
Strand = Plus / Plus
Query: 1 tcccaacaagcagtgaatctggagaactgggttaagatgggattgagcagcatcagtaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccaacaagcagtgaatctggagaactgggttaagatgggattgagcagcatcagtaaa 260
Query: 61 tactgcaaggcagttgagatcctgagcagaggatcaagctaatccacattcagaatctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactgcaaggcagttgagatcctgagcagaggatcaagctaatccacattcagaatctcc 320
Query: 121 cgtgtgataatcatatgggctgtgttcagctggcccctttgtatggcatggagccacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtgtgataatcatatgggctgtgttcagctggcccctttgtatggcatggagccacaga 380
Query: 181 aagccagcacccccacatcactctttctctgcctctggtatgagctcatcttttagtcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagccagcacccccacatcactctttctctgcctctggtatgagctcatcttttagtcaa 440
Query: 241 atatatatccagatttctagctgtaccatctagttaaggctgaaatatgggaagaattga 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatagatccagatttctagctgtaccatctagttaaggctgaaatatgggaagaattga 500
Query: 301 aatctcactcttgaggagaacatggaggccagttgtgagtggcaagaactattatcattc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatctcactcttgaggagaacatggaggccagttgtgagtggcaagaactattatcattc 560
Query: 361 agaggttccaggcgtgtaccaccatgcccagttcctgacagatcgggctatataaaattt 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaggttccaagcgtgtaccaccatgcccagttcctgacagatcgggctatataaaattt 620
Query: 421 ttatcagtgagctgtcaatgctgaccaaaactttcaagttcaagggaaatatatataagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttatcagtgagctgtcaatgctgaccaaaactttcaagttcaagggaaatatatataagc 680
Query: 481 atcacattgtctaatagcatacaagaactccagtaccaggtcataacagaggaataaaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcacattgtctaatagcatacaagaactccagtaccaggtcataacagaggaataaaaa 740
Query: 541 cctagtcttgacatgaagcagc 562
||||||||||||||||||||||
Sbjct: 741 cctagtcttgacatgaagcagc 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
