NCCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGC
GGAATTCCAGCAAATTTTCGTAAATTTTTTGTCATGGAAATGATTTCTCT
GGGCATAGTTTAGTTATTAATATAAGACCAATTGATAACATTTTGAAGAT
GTATTTTTAAAGTAAACATAGGATTCTTACACAATAAAACTTTAAACAAA
AAATCAGATTTGTGGAAATTTCTAGAAGAGCACTGAATTAAAACTGCAAC
TTATTTCAGTTTTCACACCCATTTTTAAAAATTTAACATTTTTTTCATGT
AATATATTTTGATCATGTTATCCCTTCCTTCCAACTTCTCTCAGACCCTG
CCCTTCTCCCTCCCCACCCAATTTTATGGTCCCCCAAAACAGAAACAACA
AAAAACGAGAACTGACTAAAAAGTAAAACACAGAACCGCCGCAAAAAGAA
AACCCCACAAAATTGAAGTCAAAACTGGTGTTGGCAAAAGACACCCCAAG
ACCAAGTTCTCAGCACAAGGGAGATTTATTTGCCCCAGTCAGATAAAGGG
CAGGGATTAAAAGACAAAGACNAAGATAGAGAACAAGAAAGAGGAAGAAG
GAGTATTCATCCTTGGGTGGGGAGCTGGAGGGGGTACAAAGGACTGCCTC
TGGATAGGGAGGAAACATATGTGGGCCACAGGCAGATGGCAGTTTAGAAA
GGTTTAAGAGAAAACCCTGTGTTAGGATGAAGAGTTTAATTTTGATCTGG
N

TTGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTGACCATAAATGGCAGTAAATTCAGGG
ACTTATGTCTGCTCAGGGTGTGACAAGGGAGTGACAGTGTCTGCCCAGTC
ATAATGCAAGGTATTTATTTATACCACACCAGCCAAGGATCAGGGATGTT
GTGGAAGATGTGTTGGAAAGTACATAAGAGCCAGAGGACAAGGAGAAGGG
CCGTGAGAATCCATTGCATAGATTGGATGCAATTACTGCAGTCATGAACT
TACAACAGCTGTAACAACTTGTACTGGCCCATACAAGACGACCCTATGAA
CATTCACTGCAAAAAGTAGGAGGGGTCCATGGGGCCCTACTCTTTATTTA
TAAACTGTTGTCTAATGACAGATTCTCTGACAAAGAATCATTGTTTTTTT
TTTATACTCACTACTGAGCCCACCAAAACCCAGTGGATAACTCANAACCC
ATAGTCATACAAACATCCCTGATTAGTCTCAGTGGATCACAAATAAATTG
AATGATATGAACACCACTCAGAGAGATTTATAGGAAAACAATGTGGATGA
TATGGGGTGGCAGAGTACGAATAGCTACCGTGCTCTGCCTATTTGTGTTG
TCATTATATTACTACCCTCGTTCCTTATCTTCCCTTTTTTGCCTTCCTTA
TTATTTCTTCCCTCCTTATATCTCCCTTTTCTCTCCCTCTTCTCTCGCTG

Query= MSMg01no335_o14.b1 MSMg01no335_o14.b1 CHROMAT_FILE:
MSMg01no335_o14.b1 PHD_FILE: MSMg01no335_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:50 2005
         (567 letters)



>mm_chr1_69874835_69875801
          Length = 967

 Score = 1075 bits (556), Expect = 0.0
 Identities = 564/567 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaattttttgtcatggaaatgatttctctgggcatagtttagttattaatataagacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaattttttgtcatggaaatgatttctctgggcatagtttagttattaatataagacca 260

                                                                       
Query: 61  attgataacattttgaagatgtatttttaaagtaaacataggattcttacacaataaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgataacattttgaagatgtatttttaaagtaaacataggattcttacacaataaaac 320

                                                                       
Query: 121 tttaaacaaaaaatcagatttgtggaaatttctagaagagcactgaattaaaactgcaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaaacaaaaaatcagatttgtggaaatttctagaagagcactgaattaaaactgcaac 380

                                                                       
Query: 181 ttatttcagttttcacacccatttttaaaaatttaacatttttttcatgtaatatatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatttcagttttcacacccatttttaaaaatttaacatttttttcatgtaatatatttt 440

                                                                       
Query: 241 gatcatgttatcccttccttccaacttctctcagaccctgcccttctccctccccaccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatcatgttatcccttccttccaacttctctcagaccctgcccttctccctccccaccca 500

                                                                       
Query: 301 attttatggtcccccaaaacagaaacaacaaaaaacgagaactgactaaaaagtaaaaca 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attttatggtcccccaaaacaaaaacaacaaaaaacgagaactgactaaaaagtaaaaca 560

                                                                       
Query: 361 cagaaccgccgcaaaaagaaaaccccacaaaattgaagtcaaaactggtgttggcaaaag 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagaaccgccgcaaaaagcaaaccccacaaaattgaagtcaaaactggtgttggcaaaag 620

                                                                       
Query: 421 acaccccaagaccaagttctcagcacaagggagatttatttgccccagtcagataaaggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaccccaagaccaagttctcagcacaagggagatttatttgccccagtcagataaaggg 680

                                                                       
Query: 481 cagggattaaaagacaaagacnaagatagagaacaagaaagaggaagaaggagtattcat 540
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagggattaaaagacaaagacaaagatagagaacaagaaagaggaagaaggagtattcat 740

                                      
Query: 541 ccttgggtggggagctggagggggtac 567
           |||||||||||||||||||||||||||
Sbjct: 741 ccttgggtggggagctggagggggtac 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)