Query= MSMg01no336_a23.b1 MSMg01no336_a23.b1 CHROMAT_FILE:
MSMg01no336_a23.b1 PHD_FILE: MSMg01no336_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:02 2005
(536 letters)
>mm_chr1_168827652_168828590
Length = 939
Score = 949 bits (491), Expect = 0.0
Identities = 527/543 (97%), Gaps = 10/543 (1%)
Strand = Plus / Plus
Query: 2 gaattcagtagagttcctttt-----ccttctcaaa-tgagaatgcccaaaggcatggat 55
||||||||||||||| |||| |||||||||| |||||||||||||||||||||||
Sbjct: 199 gaattcagtagagtt--tttttttttccttctcaaaatgagaatgcccaaaggcatggat 256
Query: 56 gactctgttccatggctctattcgatgactctgaagccatgactctgcgtttgtatctct 115
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 257 gactctgttccatggctctattcgatgactctgaagccatgactctgtgtttgtatctct 316
Query: 116 tgagtttgcagctctagcttatggctgtgggcacccatattgtgacaggttgtgtgaccc 175
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 317 tgagtttgcagctctagcttatggctgtgggcacccatactgtgacaggtcgtgtgaccc 376
Query: 176 ataggccttgatcaacaaaccagagtaagctgggatccactatggtgtataaaaaagatg 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ataggccttgatcaacaaaccagagtaagctgggatccactatggtgtataaaaaagatg 436
Query: 236 gagccttagctcatctcccagtcccccaaggaaatatccagtccatcttccaatattcac 295
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 437 gagccttagctcatctcccagtcccccaaggaaataaccagtccatcttccaatattcac 496
Query: 296 tgagtcctccatctggtccagccctgtgacagattccaggggaccaagattacaagaata 355
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgagccctccatctggtccagccctgtgacagattccaggggaccaagattacaagaata 556
Query: 356 aggcaataaaaagaactttggaagaagtaagcaagaatctgtacctcaagtttgttgctt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aggcaataaaaagaactttggaagaagtaagcaagaatctgtacctcaagtttgttgctt 616
Query: 416 gttttcatagcttcccattcagttgaggaaagacaatggctgcatcgaaacatttaacaa 475
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gttttcaaagcttcccattcagttgaggaaagacaatggctgcatcgaaacatttaacaa 676
Query: 476 agcaagataga--caagaaatccagacgaatgcacaggggaatggcagatgttgagccgg 533
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 agcaagatagagacaagaaatccagacgaatgcacaggggaatggcagatgttgagccgg 736
Query: 534 tca 536
|||
Sbjct: 737 tca 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 939
Length adjustment: 10
Effective length of query: 526
Effective length of database: 929
Effective search space: 488654
Effective search space used: 488654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_a23.g1 MSMg01no336_a23.g1 CHROMAT_FILE:
MSMg01no336_a23.g1 PHD_FILE: MSMg01no336_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:02 2005
(522 letters)
>mm_chr1_168993370_168994292
Length = 923
Score = 949 bits (491), Expect = 0.0
Identities = 515/523 (98%), Gaps = 1/523 (0%)
Strand = Plus / Minus
Query: 1 tgatgtgggtagaaagagaacagtataaaagttgggaaattgcgagccctcctgcacatg 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 723 tgatgtgggtagaaagagaacagtagaaaagttgggaaattgcgagccctcctgcacatg 664
Query: 61 caccactaggcctctggtacccacagccagaatcgatcactctatattatccaggccaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 caccactaggcctctggtacccacagccagaatcgatcactctatattatccaggccaga 604
Query: 121 gccatcaaaaccacctgatctctcactgatacctgagcctgccactctgggcagagagag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 603 gccatcaaaaccacctgatctctcactgatacctgagcctgccactctgggcagggagag 544
Query: 181 caaaaccagccctttaatttagcatgagcacaggctgaaaagtgcaagtcagcagggcta 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 caaaaccagccctttaattcagcatgagcacaggctgaaaagtgcaagtcagcagggcta 484
Query: 241 tgggtgttaggaagccagttctccagtgctggtgtagtaaatgccatttaagatcaaaag 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgggtgttaggaagccagttttccagtgctggtgtagtaaatgccatttaagatcaaaag 424
Query: 301 gatgccaagctattctttggctacaaccaactctgttggcgagatcataaccccagccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gatgccaagctattctttggctacaaccaactctgttggcgagatcataaccccagccaa 364
Query: 361 agggaggaatacagaaaagcacttcagagagagggttcatttgacatcagctcaatgact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agggaggaatacagaaaagcacttcagagagagggttcatttgacatcagctcaatgact 304
Query: 421 tttgattacttacaat-ggcgcgacatcttgtatgtgcaggggacaccaagactcatcag 479
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tttgattacttacaatgggtgcgacatcttgtatgtgcaggggacaccaagactcatcag 244
Query: 480 acagtgtctctgttctgagaggggaacctctcttatctgggat 522
|||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 243 acagtgtccctgttctgagaggggaacctgtcttatctgggat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 923
Length adjustment: 10
Effective length of query: 512
Effective length of database: 913
Effective search space: 467456
Effective search space used: 467456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
