TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAGATTCAAGCCTAAGCCTCTTTAGCCTACAACTTAAATTATCAG
GCTTTGAAGGTGTTCTGTTAAACAAAGCCATCCAGAAAGCCAGCCATTCA
AACAGTAAGGCTTGGCATTTTTGTTGCAAAGGTAGATTGGAAAAATAAAT
GAATCACCACAGGAGCTTTCATTTCTGGCTATTATTAACAGAAATCATGT
ATTTCCATTCAACAAATGGGAATGAAAGTCAAAACACAATAATCCAGGAA
AAAAATAATGATTTTTATATCCTGACCTTCAAAGTGTTTTTTGCGCCTCA
CTAATCTCTTTATTTTTGCATTTTCTATTTCTAGCAGACTACAGTTACCA
CAAATGAGGAGTTTTTCTAAACTAGATTAAATTATTAAAATCAAGATTTT
ACTTGATAATTGCTTTAAGATAAGCATGAATGTGTGCGCTCGCATCTGGT
GTTGTGTGTGNATGNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTNNNNNNNNNTNNNTTNNNNNTTTTNNTTN
TTNTTTTTTTTTTTTTNTTTTTTTTTTTNTTTTTTTTNTTTTTTTTTTTN
TTTTTTTTTTNNNNTTTTTNTTTNTTTTNNNTTTNTTTNTNNTTTTTTTT
TTTTTTTTNNTTTNNTTTTTTTTTTNTTTTTTT

TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATAAAGTCTTTAATTTCTTTCATTATTTC
TCCCCTGACCGAGAGATCATTGAGTAGAGAGTTTTTCAGTTTTCATGAGT
ATGTGGATTTTCTGTTGTTTATGTTGTTGTTAAAGTCCAAGTTTAATCCA
TGGTGGTCTGATAAGATGCAAAGGGTTATTTCAATGTTTTTTTTATCTGT
TGAGGCTTGCTTTGTGACTGAGTATATGGTCAGTTTTGGGGAATGTTTCA
TGAGGTGCTGAGAATAAAGTATGTTCTTTTGTATTTGGGTGAAATATTCT
GTAGATATCTGTTAGGTCTATTTGGTTTATAATATCTGTTAGTTCAATTA
TTTCTCCGTTTAGTAGTTTCTTTTCAGATGACCGGTCCATTGGTGACAGT
GGGAGGTTGAAGTCCCCACTATTATTGTGCAGGGTTTGATGTGTGATTTA
AGCTCTAGTAATGTTTCCTTTACAAATGTGAGTGTTTTTATATCTGAGGC
ATAAATGTTCAGATTTGAGATGTCATCTTGGTGTATTTTTTTTCTTGATG
AGTTTGAAGTGTCTGTTCCATCCCTTTTTACTTACTTTTGGGTGAAAGCA
ATTTTATTTGATATTGGAATGGGGATGGCAGCTTGGTTTTTTGTTTCCGT
TTGTTTTAAAAACCCCTCCCCCATTTCTTCTTGTGTT

Query= MSMg01no336_f24.b1 MSMg01no336_f24.b1 CHROMAT_FILE:
MSMg01no336_f24.b1 PHD_FILE: MSMg01no336_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:25 2005
         (458 letters)



>mm_chr1_80585552_80586409
          Length = 858

 Score =  824 bits (426), Expect = 0.0
 Identities = 447/454 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcagattcaagcctaagcctctttagcctacaacttaaattatcaggctttgaa 64
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gaattctcagagggaagcctaagcctctttagcctacaacttaaattatcaggctttgaa 599

                                                                       
Query: 65  ggtgttctgttaaacaaagccatccagaaagccagccattcaaacagtaaggcttggcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ggtgttctgttaaacaaagccatccagaaagccagccattcaaacagtaaggcttggcat 539

                                                                       
Query: 125 ttttgttgcaaaggtagattggaaaaataaatgaatcaccacaggagctttcatttctgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ttttgttgcaaaggtagattggaaaaataaatgaatcaccacaggagctttcatttctgg 479

                                                                       
Query: 185 ctattattaacagaaatcatgtatttccattcaacaaatgggaatgaaagtcaaaacaca 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ctattattaacggaaatcatgtatttccattcaacaaatgggaatgaaagtcaaaacaca 419

                                                                       
Query: 245 ataatccaggaaaaaaataatgatttttatatcctgaccttcaaagtgttttttgcgcct 304
           |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 418 ataatccaggaaaaaaataatgatttttatatcctggcctttaaagtgttttttgcgcct 359

                                                                       
Query: 305 cactaatctctttatttttgcattttctatttctagcagactacagttaccacaaatgag 364
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 358 cactaatctctttatttttgcattttccatttctagcagactacagttaccacaaatgag 299

                                                                       
Query: 365 gagtttttctaaactagattaaattattaaaatcaagattttacttgataattgctttaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gagtttttctaaactagattaaattattaaaatcaagattttacttgataattgctttaa 239

                                             
Query: 425 gataagcatgaatgtgtgcgctcgcatctggtgt 458
           ||||||||||||||||||||||||||||||||||
Sbjct: 238 gataagcatgaatgtgtgcgctcgcatctggtgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)