BAC Information

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BAC

Clone NameMSMg01-336M13
Chromosome1 (Build37)
Map Location 81,576,012 - 81,576,498
singlet/doubletsinglet
Overlap geneEG621020
Upstream geneDock10, LOC665092, 9430031J16Rik
Downstream geneLOC433328, EG665145, Irs1, Rhbdd1, Col4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336M13.T7 (MSMg01no336_m13.b1)MSMg01-336M13.TJ (MSMg01no336_m13.g1)
ACCAG451719AG451720
length729730
length of high quality
(start - end)
533 (67 - 599)219 (75 - 293)
definitionCHROMAT_FILE: MSMg01no336_m13.b1 PHD_FILE: MSMg01no336_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:57 2005CHROMAT_FILE: MSMg01no336_m13.g1 PHD_FILE: MSMg01no336_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATATTTCCATGTAGTTACAACTTTTGAATACACATGTCTCAGTA
AATGTTTACAAAAAGACTAATTGAACTTTGGACATTGTCTTAGTATGCCA
GCTTCAAATAGACTTATGAAAGAATAGGTTAATTCAATAAAATTACATGT
TTTAATCACATTAACGTGCTTTGTTGCCCTTATTTCATTCTGTAAAGTTA
TTCCAAGTGTGGTTTAGGGGACACACTTACATTTAGTTAAGTGTACTCAT
TGCACATCTTCTGAGTCTTCACATAGGTCCAATGATGTTGCTTTGTGTGT
ATTTGCTGTTTAGTTTTGGCAACTTGATTCTAACTAGGGTCACCTGGAAA
GAGGGAACTTCAACTGAGGGAGAATTTACCCCATCAAATTAACCTTGAAA
AGAAATAAAACTGTAATTCATGTAATGTATGTTAAATAGCCCAAAGAGTT
GTTTCTGAGCTTTGAAACCTGGGGCTGAGAACATAGCAGAACAGACCAGG
ACATGCCCAGGCAAGCCCATCGCCTCCCTAGCTCCCACCCCTCTGACCTA
AGTTAAATGTTACAGGCTGCTGATGGTTAAATGGACCANTCATGTGAAAC
CGCGCCAATTCCTCCCCCAGCCCCACTTCCTTTTCTAAAAAAACCCTAGC
TTCCAAGCCTCGGGGGCCAAACCACTGTN
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTATATATTGGATATTAGTCCTT
TATCACATGTAGGGTTGGCAAAGGTCTTTTTCCAATTTGTTGGCTGCCGT
TTTCTCTTATTGACAGTGTCCTTTGCTTACAGAAGCTTTGTAATTTTATG
TGGTTCCATTTGTTAATTTGAGAGATAGATAGATAGATAGATAGATAGAT
AGATAGATAGATAGATAGATTTTTGATTAGATGTTTTCTACACGCAAATA
AATCAGGCTTGTTTTTTTTTTTAATGACTCTCCTATTTGTCACTGAAGGA
TCAAATTTAGTCTGCTGCCTCTTCCCAGCAGGCTTACTGCATGTACCAGG
AATGAACCCATGCAGAAACCTATTTGCGTATAGAAAGCCAGAATACTCTG
CTCACACTGAAGCTCACATAATGAATACTTGACTAGATCAGAAATTAAGA
GACACGTGCTTAGATGTTTGCGTTAATGATGAATAGGGGGATGACCGAGA
TGATGACAGAGCCCATGTTGTTGTTGAGCACTTTCCTTAACTTCCCCAAT
GGGAACCCCGTGTTCCCTCTCTCACATGAACTGGACCCTCCTTTTTTTTT
TTTTTCCCAACTGGCCGTTTCTCCTCGTCCTCGTCCTTTTTTCCCCTCGC
TGTCCCACGATCTCCTGGTCCCTTCATTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_m13.b1 MSMg01no336_m13.b1 CHROMAT_FILE:
MSMg01no336_m13.b1 PHD_FILE: MSMg01no336_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:57 2005
         (533 letters)



>mm_chr1_81576012_81576944
          Length = 933

 Score =  926 bits (479), Expect = 0.0
 Identities = 485/487 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtagttacaacttttgaatacacatgtctcagtaaatgtttacaaaaagactaattgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gtagttacaacttttgaatacacatgtctcagtaaatgtttacaaaaagactaattgaac 428

                                                                       
Query: 61  tttggacattgtcttagtatgccagcttcaaatagacttatgaaagaataggttaattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tttggacattgtcttagtatgccagcttcaaatagacttatgaaagaataggttaattca 368

                                                                       
Query: 121 ataaaattacatgttttaatcacattaacgtgctttgttgcccttatttcattctgtaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ataaaattacatgttttaatcacattaacgtgctttgttgcccttatttcattctgtaaa 308

                                                                       
Query: 181 gttattccaagtgtggtttaggggacacacttacatttagttaagtgtactcattgcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gttattccaagtgtggtttaggggacacacttacatttagttaagtgtactcattgcaca 248

                                                                       
Query: 241 tcttctgagtcttcacataggtccaatgatgttgctttgtgtgtatttgctgtttagttt 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tcttctgagccttcacataggtccaatgatgttgctttgtgtgtatttgctgtttagttt 188

                                                                       
Query: 301 tggcaacttgattctaactagggtcacctggaaagagggaacttcaactgagggagaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tggcaacttgattctaactagggtcacctggaaagagggaacttcaactgagggagaatt 128

                                                                       
Query: 361 taccccatcaaattaaccttgaaaagaaataaaactgtaattcatgtaatgtatgttaaa 420
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 127 taccccatcaaattaaccttgaaaggaaataaaactgtaattcatgtaatgtatgttaaa 68

                                                                       
Query: 421 tagcccaaagagttgtttctgagctttgaaacctggggctgagaacatagcagaacagac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  tagcccaaagagttgtttctgagctttgaaacctggggctgagaacatagcagaacagac 8

                  
Query: 481 caggaca 487
           |||||||
Sbjct: 7   caggaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)