Query= MSMg01no336_m16.b1 MSMg01no336_m16.b1 CHROMAT_FILE:
MSMg01no336_m16.b1 PHD_FILE: MSMg01no336_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:57 2005
(510 letters)
>mm_chr1_48813740_48814649
Length = 910
Score = 913 bits (472), Expect = 0.0
Identities = 497/506 (98%), Gaps = 2/506 (0%)
Strand = Plus / Plus
Query: 5 gaattctcaggtacgttagacttactaaaacacaaatggatctgcattttaaaatgctgt 64
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctcaggaaagttagacttactaaaacacaaatggatctgcattttaaaatgctgt 266
Query: 65 aagaattgctggacgagaataagcttttccatagaggctgtctacacattgtacagtcat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 267 aagaattgctggacgagaataagcttttccatagaggctgtctacacattgtacagttat 326
Query: 125 cacatctccagctatatagcttttaggagtaatgagtcatgaagatttgggattgccagt 184
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cacatctcaagctatatagcttttaggagtaatgagtcatgaagatttgggattgccagt 386
Query: 185 gatgcagctgtctttgaataaacttgtgctttatttaactatcctaaataaactcattgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gatgcagctgtctttgaataaacttgtgctttatttaactatcctaaataaactcattgg 446
Query: 245 ctttaccaagccacactttcgtgaatttttttttttctttcatattccatataatgttct 304
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 447 ctttaccaagccacactttcgtgaattttttttt--ctttcatatcccatataatgttct 504
Query: 305 acctggtgagaagggatattttcaactctccagagaaagtaactaaatgaccttcaaatg 364
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 505 acctggtgagaagggatattttcaactctccagagaaagtaacgaaatgaccttcaaatg 564
Query: 365 agcaatgaaaacttaaaattgaaagtcatctacaactactttccaagcaaggttaccaag 424
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 565 agcaatgaaaacttaaaattgaaagtcatctacaactagtttccaagcaaggttaccaag 624
Query: 425 tatctacaatcaagagaaaatacacatcagaccctggcagcctccttgttgttagcattc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatctacaatcaagagaaaatacacatcagaccctggcagcctccttgttgttagcattc 684
Query: 485 acaaacttgataaagacaaaagctga 510
||||||||||||||||||||||||||
Sbjct: 685 acaaacttgataaagacaaaagctga 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_m16.g1 MSMg01no336_m16.g1 CHROMAT_FILE:
MSMg01no336_m16.g1 PHD_FILE: MSMg01no336_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:57 2005
(517 letters)
>mm_chr1_48935312_48936228
Length = 917
Score = 948 bits (490), Expect = 0.0
Identities = 511/518 (98%), Gaps = 2/518 (0%)
Strand = Plus / Minus
Query: 1 caaaatattttaaaaggttttactcaaacatatatatttatcttattaaataaatgtcca 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 717 caaaatattttaaaaggttttactcaaacatatatatttatctcattaaataaatttcca 658
Query: 61 actttttataattatagaattcttaaatatacattttaagatttttttacccttgccact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 actttttataattatagaattcttaaatatacattttaagatttttttacccttgccact 598
Query: 121 actaatatctatttttgagtattttcatgatgtataaaatatttaattggtcttaatgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 actaatatctatttttgagtattttcatgatgtataaaatatttaattggtcttaatgtg 538
Query: 181 aaaaatcctttaagataataaaaaagctggcatctgcaccaacttttaaaatgttgaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aaaaatcctttaagataataaaaaagctggcatctgcaccaacttttaaaatgttgaatg 478
Query: 241 ttccta-agaaattcaagatagtgtataaaattaatgaatttttaccatacagaacctta 299
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ttcctata-aaattcaagatagtgtataaaattaatgaatttttaccatacagaacctta 419
Query: 300 tgtccaatgttatttatgcactactgaattttctggacaaaactcatacaattttgaata 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tgtccaatgttatttatgcactactgaattttctggacaaaactcatacaattttgaata 359
Query: 360 gtctctacaggtttagtgataggttcaggtatatactttatgataatatactaggtatga 419
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 358 gtctctacaggtttagtgataggttcagggatatactttatgataatatactaggtatga 299
Query: 420 atttagtctttcaaaatacagctctatttaatgcataactatttgtaaattcttatacat 479
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 298 atttagtctttcaaaatacagctctatttaattcataactatttgtaaatccttatacat 239
Query: 480 ttgtatttggctaattattatatataaaactcttctga 517
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ttgtatttggctaattattatatataaaactcttctga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|