BAC Information

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BAC

Clone NameMSMg01-336M16
Chromosome1 (Build37)
Map Location 48,813,946 - 48,936,028
singlet/doubletdoublet
Overlap geneLOC666909
Upstream geneLOC546734, LOC674566, LOC100041936, LOC666903
Downstream gene2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336M16.T7 (MSMg01no336_m16.b1)MSMg01-336M16.TJ (MSMg01no336_m16.g1)
ACCAG451725AG451726
length727728
length of high quality
(start - end)
510 (45 - 554)517 (76 - 592)
definitionCHROMAT_FILE: MSMg01no336_m16.b1 PHD_FILE: MSMg01no336_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:57 2005CHROMAT_FILE: MSMg01no336_m16.g1 PHD_FILE: MSMg01no336_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,813,946 - 48,814,449)(48,935,512 - 48,936,028)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAGGTACGTTAGACTTACTAAAACACAAATGGATCTGCATTTTAA
AATGCTGTAAGAATTGCTGGACGAGAATAAGCTTTTCCATAGAGGCTGTC
TACACATTGTACAGTCATCACATCTCCAGCTATATAGCTTTTAGGAGTAA
TGAGTCATGAAGATTTGGGATTGCCAGTGATGCAGCTGTCTTTGAATAAA
CTTGTGCTTTATTTAACTATCCTAAATAAACTCATTGGCTTTACCAAGCC
ACACTTTCGTGAATTTTTTTTTTTCTTTCATATTCCATATAATGTTCTAC
CTGGTGAGAAGGGATATTTTCAACTCTCCAGAGAAAGTAACTAAATGACC
TTCAAATGAGCAATGAAAACTTAAAATTGAAAGTCATCTACAACTACTTT
CCAAGCAAGGTTACCAAGTATCTACAATCAAGAGAAAATACACATCAGAC
CCTGGCAGCCTCCTTGTTGTTAGCATTCACAAACTTGATAAAGACAAAAG
CTGAAATACAAACAAACACTTCCAGACATGTCATATCAAATTAAGAAATG
GAATACTAAAGAGAAATTTAATTTCTTTCTTTGGGTGGAANGATAGGAAG
TGGTTTGCCAAATGATTATCCCATTTGTACACTTAAAACTCCTTTATTGA
TTATCTGCATCCTGGATTAAAAAATCC
GATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAAATATTTTAAAAGGTTTTACTC
AAACATATATATTTATCTTATTAAATAAATGTCCAACTTTTTATAATTAT
AGAATTCTTAAATATACATTTTAAGATTTTTTTACCCTTGCCACTACTAA
TATCTATTTTTGAGTATTTTCATGATGTATAAAATATTTAATTGGTCTTA
ATGTGAAAAATCCTTTAAGATAATAAAAAAGCTGGCATCTGCACCAACTT
TTAAAATGTTGAATGTTCCTAAGAAATTCAAGATAGTGTATAAAATTAAT
GAATTTTTACCATACAGAACCTTATGTCCAATGTTATTTATGCACTACTG
AATTTTCTGGACAAAACTCATACAATTTTGAATAGTCTCTACAGGTTTAG
TGATAGGTTCAGGTATATACTTTATGATAATATACTAGGTATGAATTTAG
TCTTTCAAAATACAGCTCTATTTAATGCATAACTATTTGTAAATTCTTAT
ACATTTGTATTTGGCTAATTATTATATATAAAACTCTTCTGAGATATAGT
AACCCTTCTGCTTCAAATCACTTGCCACTACTCCAAACATAAGAAAGGAA
TAAGCCCCAATAATAATTGACAGAAAGAACCAATTCTCTTGGAATAAAAT
AACTACTTTTCCCAATGTAGTTTGACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_m16.b1 MSMg01no336_m16.b1 CHROMAT_FILE:
MSMg01no336_m16.b1 PHD_FILE: MSMg01no336_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:57 2005
         (510 letters)



>mm_chr1_48813740_48814649
          Length = 910

 Score =  913 bits (472), Expect = 0.0
 Identities = 497/506 (98%), Gaps = 2/506 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaggtacgttagacttactaaaacacaaatggatctgcattttaaaatgctgt 64
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctcaggaaagttagacttactaaaacacaaatggatctgcattttaaaatgctgt 266

                                                                       
Query: 65  aagaattgctggacgagaataagcttttccatagaggctgtctacacattgtacagtcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 267 aagaattgctggacgagaataagcttttccatagaggctgtctacacattgtacagttat 326

                                                                       
Query: 125 cacatctccagctatatagcttttaggagtaatgagtcatgaagatttgggattgccagt 184
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cacatctcaagctatatagcttttaggagtaatgagtcatgaagatttgggattgccagt 386

                                                                       
Query: 185 gatgcagctgtctttgaataaacttgtgctttatttaactatcctaaataaactcattgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gatgcagctgtctttgaataaacttgtgctttatttaactatcctaaataaactcattgg 446

                                                                       
Query: 245 ctttaccaagccacactttcgtgaatttttttttttctttcatattccatataatgttct 304
           ||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||
Sbjct: 447 ctttaccaagccacactttcgtgaattttttttt--ctttcatatcccatataatgttct 504

                                                                       
Query: 305 acctggtgagaagggatattttcaactctccagagaaagtaactaaatgaccttcaaatg 364
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 505 acctggtgagaagggatattttcaactctccagagaaagtaacgaaatgaccttcaaatg 564

                                                                       
Query: 365 agcaatgaaaacttaaaattgaaagtcatctacaactactttccaagcaaggttaccaag 424
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 565 agcaatgaaaacttaaaattgaaagtcatctacaactagtttccaagcaaggttaccaag 624

                                                                       
Query: 425 tatctacaatcaagagaaaatacacatcagaccctggcagcctccttgttgttagcattc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatctacaatcaagagaaaatacacatcagaccctggcagcctccttgttgttagcattc 684

                                     
Query: 485 acaaacttgataaagacaaaagctga 510
           ||||||||||||||||||||||||||
Sbjct: 685 acaaacttgataaagacaaaagctga 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no336_m16.g1 MSMg01no336_m16.g1 CHROMAT_FILE:
MSMg01no336_m16.g1 PHD_FILE: MSMg01no336_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:57 2005
         (517 letters)



>mm_chr1_48935312_48936228
          Length = 917

 Score =  948 bits (490), Expect = 0.0
 Identities = 511/518 (98%), Gaps = 2/518 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaatattttaaaaggttttactcaaacatatatatttatcttattaaataaatgtcca 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 717 caaaatattttaaaaggttttactcaaacatatatatttatctcattaaataaatttcca 658

                                                                       
Query: 61  actttttataattatagaattcttaaatatacattttaagatttttttacccttgccact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 actttttataattatagaattcttaaatatacattttaagatttttttacccttgccact 598

                                                                       
Query: 121 actaatatctatttttgagtattttcatgatgtataaaatatttaattggtcttaatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 actaatatctatttttgagtattttcatgatgtataaaatatttaattggtcttaatgtg 538

                                                                       
Query: 181 aaaaatcctttaagataataaaaaagctggcatctgcaccaacttttaaaatgttgaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aaaaatcctttaagataataaaaaagctggcatctgcaccaacttttaaaatgttgaatg 478

                                                                       
Query: 241 ttccta-agaaattcaagatagtgtataaaattaatgaatttttaccatacagaacctta 299
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ttcctata-aaattcaagatagtgtataaaattaatgaatttttaccatacagaacctta 419

                                                                       
Query: 300 tgtccaatgttatttatgcactactgaattttctggacaaaactcatacaattttgaata 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tgtccaatgttatttatgcactactgaattttctggacaaaactcatacaattttgaata 359

                                                                       
Query: 360 gtctctacaggtttagtgataggttcaggtatatactttatgataatatactaggtatga 419
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 358 gtctctacaggtttagtgataggttcagggatatactttatgataatatactaggtatga 299

                                                                       
Query: 420 atttagtctttcaaaatacagctctatttaatgcataactatttgtaaattcttatacat 479
           |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 298 atttagtctttcaaaatacagctctatttaattcataactatttgtaaatccttatacat 239

                                                 
Query: 480 ttgtatttggctaattattatatataaaactcttctga 517
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ttgtatttggctaattattatatataaaactcttctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)