BAC Information

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BAC

Clone NameMSMg01-336O19
Chromosome1 (Build37)
Map Location 14,375,672 - 14,376,066
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665341, LOC100039812, EG621685, Tram1, Lactb2, Xkr9, LOC100039843, EG433273, LOC100039859, LOC100039869, Eya1
Downstream geneLOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959, Kcnb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336O19.T7 (MSMg01no336_o19.b1)MSMg01-336O19.TJ (MSMg01no336_o19.g1)
ACCAG451826AG451827
length764778
length of high quality
(start - end)		478 (41 - 518)79 (62 - 140)
definitionCHROMAT_FILE: MSMg01no336_o19.b1 PHD_FILE: MSMg01no336_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:08 2005CHROMAT_FILE: MSMg01no336_o19.g1 PHD_FILE: MSMg01no336_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATCAGATTCCAGAAGCAGACTCCTAACCTTAAGACATATAGATATTAAAG
ATAATAAATAAACAAACAAGTGAATAGAGATTATTCTAGTGGAGATGATA
TAGCTGAAGTGTTGCATTGGTTTTCTGTTTCAGGAAATATTTAAAAAGGC
AATCAGGCACATTCCCATGCTAGTGCCAGCATCAGCAGGCCACAGGGCTC
CAGCCAAGTGATCTCAACTCGGTGGTCTCTCTACCTGCCAAATCTCCCAT
GGGGGCCCCAAGTTCCTCTCATCACCACACAAAGCCCCACACACCCCACA
GTCAGCCATCACAACACCCAATTACCAGGTAGAATTAAAACTCTTAAAGC
TTATAGTTAACCAATCAGATTTATGTATCAACAAAATCACAATTTACATG
ATGCCAATACAATAATTTCAGAGCCAATTGATAATGATAAAACCTTATGA
TAGCATAATTACCTGTGGCTGATTCCAGCCACATGGGTTCACGTCGGNCG
CCATTCTCCTTTCTCCCACTGAGACACTCTCTGTCTCTGCAACTCTTATA
TCTGCCTCCCCTTTATCTGTTCAATCACAGGGCTCTTCTGTACTATTGAA
ATCGGACAGGGAAAATCCTGCAACAGTTTTCTTCCGAAACCCCAATTTTT
TATCGATTAAATATTTTTAAACTCTGCCTATGATTCTGGGCCCGGGGGGG
GATTGTACCAAAAA

CAAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAGTGAGTATCAGACAATTTAGTGTGAGGAGGACCCTTAA
TTAAACCTGCTTCTCTTTCTGCCATCCTTTTCTATCTTAAGTGTTTATGN
TTTTGGNTTTGTATAAAATAAAAATTTGGTTGTAATACTATTAATTTCCA
CACTACCAAAACTCCCGAAATGAGGNATCCTATTACAATAAAGAGGGTGG
GTTTCAGCAGGAACCTAGCTGGACGGCCTCTGAAAGGCCACCCCAGTTTT
GACTGGAAAATGGGAAAATCCCCAAGCGGAAAATTTGGAAAAAGGCCCGC
GGCCCCTATAAAAAAATTGGAAAAAAGGCCCCCCGGGGGAACACCCCCCC
AGGAAAAAAAAAAGGGGAAAAACCGGTCTCCCGGTGTTCCCAAAAAACCC
CCCCCCCCAAAAAAAAATATGGGGGGGGCGCCCCCCCCCTCCCCCCAAAT
AAAAAAAAAAAATCCTCTGTCTCGCCCCAAAAAAAAAAAAAAAACCTTTT
TTGTGAACAAATAAAGAGGGGGGGTGTTAATAATTAAATAGAANACCCAC
CCCCGCCGGGGGAAAAAAAAAAACCTCCCCCCCCCCNAAAAAAAAAAAAA
AAGGCGGGGTTTTTTTTTTTTTTTTTTAAACATTTTTTCAAAAAAACTCC
CCTCCTCTTTTCTAAAAAAAAAAAAAAAAACACATTAAAACCCACTAATA
CTATTTCTTTTCTTCGGTCCCGCGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_o19.b1 MSMg01no336_o19.b1 CHROMAT_FILE:
MSMg01no336_o19.b1 PHD_FILE: MSMg01no336_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:08 2005
         (478 letters)



>mm_chr1_14375672_14376549
          Length = 878

 Score =  725 bits (375), Expect = 0.0
 Identities = 390/395 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcagattccagaagcagactcctaaccttaagacatatagatattaaagataa 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gaattcatcagatttcagaagcagactcctaaccttaagacatatagatattaaagataa 336

                                                                       
Query: 65  taaataaacaaacaagtgaatagagattattctagtggagatgatatagctgaagtgttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 taaataaacaaacaagtgaatagagattattctagtggagatgatatagctgaagtgttg 276

                                                                       
Query: 125 cattggttttctgtttcaggaaatatttaaaaaggcaatcaggcacattcccatgctagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 275 cattggttttctgtttcaggaaatatttaaaaaggcaatcaggcacattcccacgctagt 216

                                                                       
Query: 185 gccagcatcagcaggccacagggctccagccaagtgatctcaactcggtggtctctctac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gccagcatcagcaggccacagggctccagccaagtgatctcaactcggtggtctctctac 156

                                                                       
Query: 245 ctgccaaatctcccatgggggccccaagttcctctcatcaccacacaaagccccacacac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 155 ctgccaaatctcccatgggggccccaagttcctctcatcaccacacaaagctccacacac 96

                                                                       
Query: 305 cccacagtcagccatcacaacacccaattaccaggtagaattaaaactcttaaagcttat 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 95  cccacagtcagccatcacaacacccaattaccaggtagaattaaaactcttaaatcttat 36

                                              
Query: 365 agttaaccaatcagatttatgtatcaacaaaatca 399
           ||||||||||||||||||||||||||| |||||||
Sbjct: 35  agttaaccaatcagatttatgtatcaataaaatca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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