BAC Information

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BAC

Clone NameMSMg01-337A14
Chromosome1 (Build37)
Map Location 80,713,892 - 80,714,611
singlet/doubletsinglet
Overlap geneDock10
Upstream geneWdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik
Downstream geneLOC665092, 9430031J16Rik, EG621020
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337A14.T7 (MSMg01no337_a14.b1)MSMg01-337A14.TJ (MSMg01no337_a14.g1)
ACCAG451911AG451912
length757705
length of high quality
(start - end)		717 (41 - 757)36 (66 - 101)
definitionCHROMAT_FILE: MSMg01no337_a14.b1 PHD_FILE: MSMg01no337_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:17 2005CHROMAT_FILE: MSMg01no337_a14.g1 PHD_FILE: MSMg01no337_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATCTATGTTATAAACTGTAAACAGAATAAAAGTCTGTGCGAATGACACAG
TATTAAGCTCTGCATGTAAAGGGGAGTTCACAATGACACTGATGTACCAG
GAAAAATCAGAAGATGCTCAGTAGCCATAGTGTAGGGCCAGAGAGATCTC
TGAGACATTTAGAAGTAAATTTTACTTTGATAAGTACTTCCTGTGATTCA
CAATGAAAAGTTAGGAGATTAAACTGAGTAAACTGAGCTATTTTCAAAAG
TTAGCTATGGGAAAACTAGTCTAGGCCAGCATGCGACAAGCCAGTGACTA
ACTCCTTTCAGCACTTGCCCTGCTTTACTTATCTTGCTTACTTTCACATT
TGAGTCATGGCAGGAATTTATTACCCATGTCCTGAACATCCCAGATGAAA
TTTAGTTTGTGATAATCATGGGTTGCTCTTCAAACTTAAAGATGACAGTC
TTCAAAGCCACTGACGAATGTTCTCTCAAATCAGTTAGGAAGCTGAGAAG
GAGGCTGGAAAATTGAGCACATCTGAGCTTTGCTATTTTCCAGACCCAGA
CTTTGAACATACCCTCAGATAANAATCATTTGAAAGGTAACAACACATGC
CAAGTTTTAACCAAAGATGGTGTATTGGAGGTAGTCATAGGATAATGGTC
ACCTTCTTTTTAAACCTAAAGCTTAGCAACTTTCTTCTTCTTCTTCTTCT
TCTTCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAATTCTCCACAGAACGGTACTTTTCCTCCTTCGG
AGAGAAATGGTTTTAAAAAGAACCACTATATTCAAAAGCTAAATAACATT
TAATCTAAGTGAATCATACAGGNAANCACGCTAGAAGTACTACCACACAT
GCTCATTGGACTTTACCCAGAACACATANGGTTCTGATCCTCCCAGGAAC
TCCCGCCAAAAAAACCCATTCCGGGGAAAAAAATTGGCAAAGGAACCCCC
CCCCGGCCGGAAAAGGGGAACTTCCTGGGCGGAAAAAAAGCAGGCGCCCC
TCCCGGGCCAAAAGGGGGGGGGGGTTTTTCCGAGGGGGGGGGGGGTTTTT
TTTTTATATAAAAACCCCGTGGGGGAAAAAAAAAACCCTTTTGTTTTTTC
AAACAAAAAAAACAAAAAAAAATTTTTTTTTTTTTTTTAAAGGGGGCTTT
TTTTTTTTTTTTTGTTAAAAAAAAGGNTTTCACCCCCGGGGGGGGGCCCC
CCCACACCCCCTTTTTTTTGGGGGGGGTTTTTGGTGGCGGGTTTTTTTTT
TAAAAAACCCCCCCCCCCTCTTTTTGAGAAACACCCCCTCCTCTATTAAA
AAAAAAAAAAATNTNNNNNTTTATATTTTTTTTTTTCTCGTGGGGGGGGG
GCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_a14.b1 MSMg01no337_a14.b1 CHROMAT_FILE:
MSMg01no337_a14.b1 PHD_FILE: MSMg01no337_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:17 2005
         (717 letters)



>mm_chr1_80713689_80714811
          Length = 1123

 Score = 1201 bits (621), Expect = 0.0
 Identities = 693/720 (96%), Gaps = 6/720 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatctatgttataaactgtaaacagaataaaagtctgtgcgaatgacacagtat 63
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 204 ggaattcatctatgttataaactgtaaacagaataaaagtctgtgtgaatgacacagtat 263

                                                                       
Query: 64  taagctctgcatgtaaaggggagttcacaatgacactgatgtaccaggaaaaatcagaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taagctctgcatgtaaaggggagttcacaatgacactgatgtaccaggaaaaatcagaag 323

                                                                       
Query: 124 atgctcagtagccatagtgtagggccagagagatctctgagacatttagaagtaaatttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgctcagtagccatagtgtagggccagagagatctctgagacatttagaagtaaatttt 383

                                                                       
Query: 184 actttgataagtacttcctgtgattcacaatgaaaagttaggagattaaactgagtaaac 243
           |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 384 actttgataagtactttctgtgattcacagtgaaaagttaggagattaaactgagtaaac 443

                                                                       
Query: 244 tgagctattttcaaaagttagctatgggaaaactagtctaggccagcatgcgacaagcca 303
           ||||||||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||
Sbjct: 444 tgagctattttaaaaagttagctatggtaaaactagtctaggccggcatgtgacaagcca 503

                                                                       
Query: 304 gtgactaactcctttcagcacttgccctgctttacttatcttgcttactttcacatttga 363
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 504 gtgactaactcctttcagcacttgccctgctttacttctcttgcttactttcacatttga 563

                                                                       
Query: 364 gtcatggcaggaatttattacccatgtcctgaacatcccagatgaaatttagtttgtgat 423
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtcatggcaggaatttaccacccatgtcctgaacatcccagatgaaatttagtttgtgat 623

                                                                       
Query: 424 aatcatgggttgctcttcaaacttaaagatgacagtcttcaaagccactgacgaatgttc 483
           ||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 624 aatcacgggttgctcttcaaacttaaagatgacagtcttaaaagccactgactaatgttc 683

                                                                       
Query: 484 tctcaaatcagttaggaagctgagaaggaggctggaaaattgagcacatctgagctttgc 543
           ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 684 tctcaaatcagttaggaagcttagaaggaggctggaaatttgagcacatctgagctttgc 743

                                                                       
Query: 544 tattttccagacccagactttgaacataccctcagataanaatcatttgaaaggtaacaa 603
           ||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 744 tatttaccagacccaggctttgaacataccctcagataaaaatcatttgaaaggtaacaa 803

                                                                       
Query: 604 cacatgccaagttttaaccaaagatggtgt-----attggaggtagtcataggataatgg 658
            |||||| |||||||||||||||||||||      |||||||||||||||||||||||||
Sbjct: 804 tacatgcaaagttttaaccaaagatggtggcagggattggaggtagtcataggataatgg 863

                                                                       
Query: 659 tcaccttctttttaaa-cctaaagcttagcaactttcttcttcttcttcttcttcttctt 717
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tcaccttctttttaaaacctaaagcttagcaactttcttcttcttcttcttcttcttctt 923


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1123
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1113
Effective search space:   786891
Effective search space used:   786891
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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