Query= MSMg01no337_d12.b1 MSMg01no337_d12.b1 CHROMAT_FILE:
MSMg01no337_d12.b1 PHD_FILE: MSMg01no337_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:32 2005
(573 letters)
>mm_chr1_145629620_145630588
Length = 969
Score = 1035 bits (535), Expect = 0.0
Identities = 559/569 (98%), Gaps = 4/569 (0%)
Strand = Plus / Plus
Query: 5 gaattcagacaagttactatcctgaatattcttgtgttgacatcatattgtgtagatttt 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagacaagttaatatcctgaatattcttgtgttgacatcatattgtgtagatttt 264
Query: 65 agagaaacactatccaaaactgtttacacacaagagattctggtagatagttatttttat 124
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agagaaacactatccgaaactgtttacacacaagagattctggtagatagttatttttat 324
Query: 125 gtcttataataatgctagccgccatctagtggcttttagtgttaggcactctatgtctta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcttataataatgctagccgccatctagtggcttttagtgttaggcactctatgtctta 384
Query: 185 tttattctctcatttttgccttcacaactgtgtgagaataatatagaggcaaaatggtca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttattctctcatttttgccttcacaactgtgtgagaataatatagaggcaaaatggtca 444
Query: 245 tatgtagtaatggtcgagccatgattcaaatttagcggtttaagaagctgaatacttact 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatgtagtaatggtcgagccatgattcaaatttagcggtttaagaagctgaatactt--- 501
Query: 305 ttgtgagtactgtggtacttctagaatgaagtttcttggctggggctaaaactattgttt 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 -tgtgagtactgtggtacttctagaatgaagtttcttggctggggctaaaactattgttt 560
Query: 365 tagataatcctggacgctctcaactactgtattcgaatcatccacctgtcttagctttcc 424
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagataatactggaggctctcaactactgtattcgaatcatccacctgtcttagctttcc 620
Query: 425 tagtacctggaataatagatgtattatctatctagtcagataatttgtcctgtgtaatgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagtacctggaataatagatgtattatctatctagtcagataatttgtcctgtgtaatgt 680
Query: 485 aggatgtttgtgattatctctttctactagatgccagtggtaagtcacctgaattgttca 544
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggatgtttgtggttatctctttctactagatgccagtggtaagtcacctgaattgttca 740
Query: 545 tgctattgactcgaaaaagaaaagaaagg 573
||||||||||| |||||||||||||||||
Sbjct: 741 tgctattgactagaaaaagaaaagaaagg 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 969
Length adjustment: 10
Effective length of query: 563
Effective length of database: 959
Effective search space: 539917
Effective search space used: 539917
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_d12.g1 MSMg01no337_d12.g1 CHROMAT_FILE:
MSMg01no337_d12.g1 PHD_FILE: MSMg01no337_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:32 2005
(509 letters)
>mm_chr1_145841551_145842464
Length = 914
Score = 893 bits (462), Expect = 0.0
Identities = 500/514 (97%), Gaps = 5/514 (0%)
Strand = Plus / Minus
Query: 1 caatgggcttttgccctgaattctgaaaatgatgattctgagatttcagagttattaggg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 859 caatgggcttttgccctgaattctgaaaatgatgattctgagattgcagagttattaggg 800
Query: 61 ataataggtatcttagagatgcctttgcaaataaaaactgaagatgctcatgcataaata 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 799 ataataggtatcttagagatgcctttgcaaataaaaactgatgatgctcatgcataaata 740
Query: 121 tccaataaaataaaataattttaaacatcatggcataaaatctgttacagacatagctta 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 739 tccaataaaataaaataattttaaacatcatgccataaaatctgttacagacatagctta 680
Query: 181 caatcctgaaggtcaagcaattatggagatgcctaacaaaaaattaaagaaaatgcccat 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 679 caatcctgaaggtcaagcaattatggagacgcctaacaaaaaattaaagaaaatgcccat 620
Query: 241 agagcagaaggatgatgtggaattctccaaggagagattaaataatgcgttattgatttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agagcagaaggatgatgtggaattctccaaggagagattaaataatgcgttattgatttt 560
Query: 301 aaaatttttaaatgtcaatgaaacagataactgtgaaaatacactggattttagaaagga 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 559 aaaatttttaaatgtcaatgaaacagataactgtgaaaatacactggattttaggaagga 500
Query: 361 ctc---t-tga-attggcataaatgtgatatcctcaaaatggaaaacaagaaagacatta 415
|| | ||| | |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 499 ctaaaatgtgataatggcataaatgtgatatcctcaaaatggaaaacaagaaagacgtta 440
Query: 416 tattggggaagagaatatgctcttgtttcaacaggaagaggaaagctctggatttctttc 475
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 439 tattggggaagagaatatgctcttgtttcaacaggaagagaaaagctctggatttctttc 380
Query: 476 aagtcagattattatttcttgatataagtcagat 509
||||||||||||||||||||||||||||||||||
Sbjct: 379 aagtcagattattatttcttgatataagtcagat 346
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 914
Length adjustment: 10
Effective length of query: 499
Effective length of database: 904
Effective search space: 451096
Effective search space used: 451096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
