XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AACATCACTCCAGAGGATTTCCAAATGCATTCCCTAAAATTTAACTTAAA
TCAAGGGGACTTAAAATCTCCCCAAAGGAGGGCCTAGAATCCTGGAATGA
GGTGTTTCAATTCATTCATTGATCTTATTGATAAATATTTCAGACCCAGA
CATCTGGACCTGTGGTACCTGTTTTGCTCACAAAAGGCAAGACCAGGAAG
GCTATCTTTTGTCCCTATCATTCCTCCCCATGATAGCTGTCATCAAGCAA
TTCATAGGGAAATCACCCAAGCTTAGCAATGACCCATTACAGGAGGAAAA
CATAGGAGGATAAAGGGGAAGAAGACCCTGAGTATAGTCAATTGGTGGAT
CTAGTAGTTATAGAAAGGGCAGTTGACTTAATTAGGCAGAAGTTACTCCC
TAACCCACAATACCATCCCCACTTTACCCTACTCTCCCACCTTACAAGGC
CTCATTGGCTACAGAGGACAAAGAACTAAAAATTACGAACAAGATTCCCC
AAAACACAGAGATAGCCCTCCTCAACCCTCAGTGCCACTACTTATGGCAT
CTCTATAATTTTGAGATGCTAGAAACAATTATTCCTAGCTTCTCCCATTA
CCCATCCCCTGGTCTTAATGGCTCATGGATCTAGAACCTCTACCCATAAG
GACTTGTCTGGCTAATCTAAATGTATCTAGACNATATCTGATGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGAGATAT
GCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATT
GGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTC
TGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAG
TTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTTG
TTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCA
GTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGTGT
ACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAA
ACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGT
TGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTGTGGCTCTTGCCG
GGAAGGTGGCTGGTTGTCTGGAGCTGAGGATGGTGCCGCCCCAGAATCTC
TGCGACTCTCTCGCCCGTCCCAAAAAGGGCTGTCACTCTGTTTTCCCCAG
GGTCACCCGTGGAACCTGGCCTTCTCGGGAGTCCCGAAGCCAAAAAGTCC
TCCCCCGGGGCCTTTGTCTCAAACCTCTCTGTCCCAGGAAAACCCCCGGT
TTTTCTCCAAAAAGGTGGCGCGGTTTTTCGTAGTATAN

Query= MSMg01no337_d19.b1 MSMg01no337_d19.b1 CHROMAT_FILE:
MSMg01no337_d19.b1 PHD_FILE: MSMg01no337_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:33 2005
         (680 letters)



>mm_chr1_144028836_144029915
          Length = 1080

 Score = 1286 bits (665), Expect = 0.0
 Identities = 676/680 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggatttccaaatgcattccctaaaatttaacttaaatcaaggggacttaaaatctcccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggatttccaaatgcattccctaaaatttaacttaaatcaaggggacttaaaatctcccca 260

                                                                       
Query: 61  aaggagggcctagaatcctggaatgaggtgtttcaattcattcattgatcttattgataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 261 aaggagggcctagaatcctggaatgaggtgtttcaattcattcattgatcttattgatgg 320

                                                                       
Query: 121 atatttcagacccagacatctggacctgtggtacctgttttgctcacaaaaggcaagacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatttcagacccagacatctggacctgtggtacctgttttgctcacaaaaggcaagacc 380

                                                                       
Query: 181 aggaaggctatcttttgtccctatcattcctccccatgatagctgtcatcaagcaattca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaaggctatcttttgtccctatcattcctccccatgatagctgtcatcaagcaattca 440

                                                                       
Query: 241 tagggaaatcacccaagcttagcaatgacccattacaggaggaaaacataggaggataaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagggaaatcacccaagcttagcaatgacccattacaggaggaaaacataggaggataaa 500

                                                                       
Query: 301 ggggaagaagaccctgagtatagtcaattggtggatctagtagttatagaaagggcagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggggaagaagaccctgagtatagtcaattggtggatctagtagttatagaaagggcagtt 560

                                                                       
Query: 361 gacttaattaggcagaagttactccctaacccacaataccatccccactttaccctactc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacttaattaggcagaagttactccctaacccacaataccatccccactttaccctactc 620

                                                                       
Query: 421 tcccaccttacaaggcctcattggctacagaggacaaagaactaaaaattacgaacaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcccaccttacaaggcctcattggctacagaggacaaagaactaaaaattacgaacaaga 680

                                                                       
Query: 481 ttccccaaaacacagagatagccctcctcaaccctcagtgccactacttatggcatctct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttccccaaaacacagagatagccctcctcaaccctcagtgccactacttatggcatctct 740

                                                                       
Query: 541 ataattttgagatgctagaaacaattattcctagcttctcccattacccatcccctggtc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ataattttgagatgctagaaacaattattcctagcttctcccattacccatcccctggtc 800

                                                                       
Query: 601 ttaatggctcatggatctagaacctctacccataaggacttgtctggctaatctaaatgt 660
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 801 ttaatggctcatggatctagaacctctacccgtaaggacttgtctggctaatctaaatgt 860

                               
Query: 661 atctagacnatatctgatgg 680
           |||||||| |||||||||||
Sbjct: 861 atctagacaatatctgatgg 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)