CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATACGGGCTTATGGTTCCAGCAGAATATTAGAGTCCGTGACACAGCA
GTCAGCAAGCATGGCGGCCAGAGGAGCACCTGAGCTCATATCTTGAATTA
CAACAAGAAGTGGAGATGGCACACTAGAAATAGCAAGATGCTTTACATTT
TCAAAGGCAAACTCCAAAGATAGACTTTCCCCAGCAAGGCCACATTTCTT
CAAACTCCCAAACAGTGCTGCTAACTGGAAGCTAAGAGCTCAAACACTGA
AGACTGTGGAAAACATCTCACTTGAACCTACATAGCTCGTAAATCCTTTG
CTGAGATGAGTCCCTCCACAGGAAGCAGCAAAGCCACCAACCCTATCCAT
CAATAGGACCATAGTTTACCAAGGCTTCTCAAGCTCTATATGCTGCTCAC
TGCTTGTTTTTGTGAGAGATGATTGGCTGATTGGCTGCTTGAGGTTTTGG
TTGGGTTTGTTAAGAAAGCTTCTAAAGTCATAGTCAAAAAGTAACTTCAT
CTCACTCTACATATTAGTCCCAGTTAAATCAGACATCCTTAGTGGTATTT
TCTGTAGTGGAGAATGGTCAAATGTTCATATTCTCCTGGAGGAATCTCAG
GGTCCTTTCTGAAATAGGGAGAAAGTGATAAGAGGCAGGAACTAGAAGAA
AGATACCGATGGAGAAAGGCATGATGATCTGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGAAAATAAATATGTTGCAAAC
CCAAAAACTGGAGACACAATGAAAATAGTGCTAAGAGGAAAGTCCATGGC
ACTAATTGCCTAACTTCAAGGGAGAGAGAATGAAAGAGAGAGAGAGACAG
ACAGACAGAGAGAGAGAGACAGAGAGAGAGAGNATAGAGNAGAGNNACAG
CGNNNAGAGACNNACACACTATGAGAGACAGAGAGAGAGAGACAGAGAGA
GAGAGAGACAGATAGAGAGACAGAGAGGAGAGAACTCAGACTAGCCATTT
AACAGCACACCCTGAATGGGTTCTAGAACAGAAAGGAGGAAAAAGGCCGA
ATCCCCCAGAAGGGAAATTAGGACCCCCCCTGGGAAAATTTATACCCCGG
GGAGGNACCCCGGGGGAGCCTTTTCCTTCAAAAGGGGGGGGTGGGGTGGA
AATTGCCTCCGCCTCCCCGGAAAAAAGGGCGACAAAAACGGGGGGTTTAA
ACCCGGGAGAACCCCCCCCCCAAGNNNNNNNAAGGAGTGAGAGAGTGCAC
AGCCCNNNNNNNNNTGAGGGCCCTTTTTTAGGGACTAAGNAAAAAAAAGA
ACCCGTCCCGGGTGGGGGGAGATTTTTTTTCTCTTTTTTTCTTTCCCTTA
TCACCCCACCCACTTTTTGTATTANNGTGTGGCGGGCCATTTTTTGTGGT
GCGGGTGTTTTTCTGCNCTGCGGGGTGGTTTTTTTTTTTCACCCCCGGCT
GTTGTGCTGTTCCTTTCTACACCCCCCCCTCTCCTCCCCCCTG

Query= MSMg01no337_l02.b1 MSMg01no337_l02.b1 CHROMAT_FILE:
MSMg01no337_l02.b1 PHD_FILE: MSMg01no337_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:09 2005
         (644 letters)



>mm_chr1_32743543_32744587
          Length = 1045

 Score = 1216 bits (629), Expect = 0.0
 Identities = 638/641 (99%), Gaps = 1/641 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatacgggcttatggttccagcagaatattagagtccgtgacacagcagtcagca 64
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatacgggcttatggttccaggagaatattagagtccgtgacacagcagtcagca 264

                                                                       
Query: 65  agcatggcggccagaggagcacctgagctcatatcttgaattacaacaagaagtggagat 124
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 agcatggcggccagaggagcacctgaactcatatcttgaattacaacaagaagtggagat 324

                                                                       
Query: 125 ggcacactagaaatagcaagatgctttacattttcaaaggcaaactccaaagatagactt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggcacactagaaatagcaagatgctttacattttcaaaggcaaactccaaagatagactt 384

                                                                       
Query: 185 tccccagcaaggccacatttcttcaaactcccaaacagtgctgctaactggaagctaaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccccagcaaggccacatttcttcaaactcccaaacagtgctgctaactggaagctaaga 444

                                                                       
Query: 245 gctcaaacactgaagactgtggaaaacatctcacttgaacctacatagctcgtaaatcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctcaaacactgaagactgtggaaaacatctcacttgaacctacatagctcgtaaatcct 504

                                                                       
Query: 305 ttgctgagatgagtccctccacaggaagcagcaaagccaccaaccctatccatcaatagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgctgagatgagtccctccacaggaagcagcaaagccaccaaccctatccatcaatagg 564

                                                                       
Query: 365 accatagtttaccaaggcttctcaagctctatatgctgctcactgcttgtttttgtgaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 accatagtttaccaaggcttctcaagctctatatgctgctcactgcttgtttttgtgaga 624

                                                                       
Query: 425 gatgattggctgattggctgcttgaggttttggttgggtttgttaagaaagcttctaaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gatgattggctgattggctgcttgaggttttggttgggtttgttaagaaagcttctaaag 684

                                                                       
Query: 485 tcatagtcaaaaag-taacttcatctcactctacatattagtcccagttaaatcagacat 543
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcatagtcaaaaagataacttcatctcactctacatattagtcccagttaaatcagacat 744

                                                                       
Query: 544 ccttagtggtattttctgtagtggagaatggtcaaatgttcatattctcctggaggaatc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ccttagtggtattttctgtagtggagaatggtcaaatgttcatattctcctggaggaatc 804

                                                    
Query: 604 tcagggtcctttctgaaatagggagaaagtgataagaggca 644
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcagggtcctttctgaaatagggagaaagtgataagaggca 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1045
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1035
Effective search space:   656190
Effective search space used:   656190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)