BAC Information

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BAC

Clone NameMSMg01-337L24
Chromosome1 (Build37)
Map Location 53,347,779 - 53,348,162
singlet/doubletsinglet
Overlap genePms1
Upstream geneLOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik
Downstream geneLOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b, Hecw2, 4930511H11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337L24.T7 (MSMg01no337_l24.b1)MSMg01-337L24.TJ (MSMg01no337_l24.g1)
ACCAG452448AG452449
length765757
length of high quality
(start - end)
266 (41 - 306)384 (69 - 452)
definitionCHROMAT_FILE: MSMg01no337_l24.b1 PHD_FILE: MSMg01no337_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:13 2005CHROMAT_FILE: MSMg01no337_l24.g1 PHD_FILE: MSMg01no337_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACATTTGCTGGCGCTAATACCACTCACTATATTTCGAGGATCCGCGGAAT
TCGTGTTCTCTTACCGTCTGTATAACATCTGTCTAGGATCTTCTGACTTT
CATAGTCTCTGGTGTAATTCTGATAGGCCTGCCTTTATATGTTACTTGAC
CTTTTTCCCTTACTGCTTTTAATATTCTATCCTTATTTAGTGCATTTGTT
GTTCTGATTAGTATGTGTCATGAGGAATTTCTTTTCTGGTCCACTCTATT
TGTAGTTCTGTAGGCTTCTTGTATGTTCATGGGCATCTCTTTCTTTAGGT
TTGGGAAGGTCTCTTCTACCATTTTGTTGAACATATTTGCTGGTTCTTTA
AGTTGAAAATCTTCAGTCTCATCTACTCCTATTATCTGTATGTTTGGTCT
TCTCATTGCTGTCCTGAACTTCCTGTATGCTTTGAGTTATGATCTTTTTG
CATTTTGTATTTTCCTTGATTGTTGAGTCTATGTTCTCCATGTAATCTTC
TGCTCCTGAGTTTCTCCCTTTCTTCTCCCGTATCCTGTATTTGAAGCTTG
CTTCTATGTTTCCTCGATTTCTTTCCTATGCTTTCTATCTTCTGTACTGC
CTCCCCTTTTCGTTTTTCTTTTAATGCTTCTCCCTCCTTTCTTCTATTCT
TCGTATAGCCTCTATTTCTTCTCCCCCTCCAATTGCTTAATTCGTTCTCT
TCTCCTCTAATTTTTTCTTATGATGCTATCTCCTATTTCTCTTCTCCTCT
TCTTCTCCACTCTTT
ACAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGAGTAAACCACAATCTTGCAGTGATTCTC
CTGTGTGTTAGCTCCTGAGCGCTAGAATTAAAGGTGTACATATGGCAGGG
ATGGGGCTTTACATCTGCTTTTATTTATGCCTAACTTCAGAAAATATTTC
GGGAAGATTAGCTTGACAACATGTAACTCCTTTAGAAAGCTAAGAAGAGT
TTTGTTGCTGTTGTTATTTGGGGGAAGAGACCAAAAAAACTGTAAAAACA
AAACAAACAAGCAAAATACTCTAAGAACTTCCTTAATTCCACACAACTAA
CTATATATTTAAACAATTAACTGAACCTAAGGAATCTAGTTGTAAACAAA
ATGATAATGCAAAGCACAAAACAAAAAGTCAGTTTATGATTCTTTCTCAG
GCAATAGAAGAGCAGCTGTCATGTGAGGAGCTGGTAACTGCGGCAGAAGT
GAGGACGGGCACTGTAACAATTATGCCAGGATTTGTAGATAAGCTTCTGA
GAAGAGGATAACTTAATATTTCTCCAATACTTATGTCTTCATGAATAAGA
CCAAGCTGATTGGCTTATTAGGCAAACAGATCAACGTTCAAAACCCATGT
CTTTAAAGTCTTTTATCGAATTCAAACTTAAATTCCCTCTGCAATAAACA
ACGATTCCTGCCCCAGTAAAATATGCTTGCATATTGGCTCCACCGGCTTC
CGCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_l24.g1 MSMg01no337_l24.g1 CHROMAT_FILE:
MSMg01no337_l24.g1 PHD_FILE: MSMg01no337_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:13 2005
         (384 letters)



>mm_chr1_53347579_53348362
          Length = 784

 Score =  681 bits (352), Expect = 0.0
 Identities = 376/384 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgagtaaaccacaatcttgcagtgattctcctgtgtgttagctcctgagcgctagaat 60
           |||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 201 actgagtaaacctcaatcttgcattgattctcctgtgtgttagctcctgagcactagaat 260

                                                                       
Query: 61  taaaggtgtacatatggcagggatggggctttacatctgcttttatttatgcctaacttc 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaggtgtacatatggcagggagggggctttacatctgcttttatttatgcctaacttc 320

                                                                       
Query: 121 agaaaatatttcgggaagattagcttgacaacatgtaactcctttagaaagctaagaaga 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 agaaaatatttcgggaagattagcttgacaacacgtaactcctttagaaagctaagaaga 380

                                                                       
Query: 181 gttttgttgctgttgttatttgggggaagagaccaaaaaaactgtaaaaacaaaacaaac 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctttgttgctgttgttatttgggggaagagaccaaaaaaactgtaaaaacaaaacaaac 440

                                                                       
Query: 241 aagcaaaatactctaagaacttccttaattccacacaactaactatatatttaaacaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 aagcaaaatactctaagaacttccttaattccacacaactaactatatatttaaacaatg 500

                                                                       
Query: 301 aactgaacctaaggaatctagttgtaaacaaaatgataatgcaaagcacaaaacaaaaag 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 aactgaacctaaggaatctagttgtatacaaaatgataatgcaaagcacaaaacaaaaag 560

                                   
Query: 361 tcagtttatgattctttctcaggc 384
           ||||||||||||||||||||||||
Sbjct: 561 tcagtttatgattctttctcaggc 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)