Query= MSMg01no338_f01.b1 MSMg01no338_f01.b1 CHROMAT_FILE:
MSMg01no338_f01.b1 PHD_FILE: MSMg01no338_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:55 2005
(564 letters)
>mm_chr1_89541987_89542950
Length = 964
Score = 986 bits (510), Expect = 0.0
Identities = 544/562 (96%), Gaps = 12/562 (2%)
Strand = Plus / Plus
Query: 5 gaattcaacccttgtccttacataccctaagtgagtagtactctaccactgacctacacc 64
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacccaaggccttacataccctaagtgagtagtactctaccactgacctacacc 264
Query: 65 ccaatgcctcaagagtacatctaaagacagattttgcttgttcgaagtggggagggggaa 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaatgccccaagagtacatctaaagacagattttgcttgttcgaagtggggagggggaa 324
Query: 125 atgcatatggtaagaagatgaacttccccggttgtgtgtacgaggagaaggcttccttaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgcatatggtaagaagatgaacttccccggttgtgtgtacgaggagaaggcttccttaa 384
Query: 185 agttagctggcaaacatgcaagtaggagaaggctgatatttcctgtcaccaacatctcac 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agttagctggcaaacatgcaagtaggagaaggctgatatttcctgtcaccaacatct--- 441
Query: 245 ccaatcttctgtccagaaacacagcctaaccaataagcccggctttcactatctccagtc 304
||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 442 -------tctgtccagaaacacagcctaaccaataagcccagctttcactatctccagtc 494
Query: 305 ctgaaggacacctcgccctcactgcctgcccagggctcagtgattctcttaagataaagg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctgaaggacacctcgccctcactgcctgcccagggctcagtgattctcttaagataaagg 554
Query: 365 aagagtgggtggaataatcttgacctcaagatggaaatgattgcacaggaagagcaaggg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aagagtgggtggaataatcttgacctcaagatggaaatgattgcacaggaagagcaaggg 614
Query: 425 gtggggagattaatgtggcctgcgaaaaaaaa--cggagaaagcaagctgagggatccat 482
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 615 gtggggagattaatgtggcctgcgaaaaaaaaaacggagaaagcaagctgagggatccat 674
Query: 483 gtgggcttttgtgacacccgggaccactgcacactatagtcctgctatagatgctatata 542
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 675 gtgggcttttgtgacacccgggaccactgcacactatagtcttgctatagatgctatata 734
Query: 543 gtcctgctatatagatgtggct 564
||||||||||||||||||||||
Sbjct: 735 gtcctgctatatagatgtggct 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_f01.g1 MSMg01no338_f01.g1 CHROMAT_FILE:
MSMg01no338_f01.g1 PHD_FILE: MSMg01no338_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:55 2005
(534 letters)
>mm_chr1_89705975_89706908
Length = 934
Score = 978 bits (506), Expect = 0.0
Identities = 527/534 (98%)
Strand = Plus / Minus
Query: 1 tttccctccatatggatggtgggaaaccttcccactccgttctctcctcctcaactcaag 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 619 tttccctccatatggatggtgggaaaccttcccactccgttctctccttctcaactcaag 560
Query: 61 cccaggtctgttaagcaactaggtaaatctgataggctaacccataggttagcggaaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cccaggtctgttaagcaactaggtaaatctgataggctaacccataggttagcggaaggt 500
Query: 121 cgtgcccacagacacagtcagcccttctgtttctagttatgcgctaaaaggtcttgtctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cgtgcccacagacacagtcagcccttctgtttctagttatgcgctaaaaggtcttgtctc 440
Query: 181 tgtatccagagtctttctggactagacaaaggagaaggagatccagaaaagtgatcagcc 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 439 tgtatccagagtctttctggactagacaaaggagaaggagatccagagaagtgatcagcc 380
Query: 241 gagccccgctcaagtaaaccggaaaccacacactgaggaagaagggtgtggtgcgagttg 300
|||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 379 gagccctgctcaagtaaactggaaaccacacactgaggaagaagggtgtggtgtgagttg 320
Query: 301 gtagggatgccacccatgttctcagcagccagtctcctcagctatttggtaggagaacgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtagggatgccacccatgttctcagcagccagtctcctcagctatttggtaggagaacgg 260
Query: 361 gggtggtgggctgctttgttaccagaggcctgcaaatgccttgaggtgaggatctagagc 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggatggtgggctgctttgttaccagaggcctgcaaatgccttgaggtgaggatctagagc 200
Query: 421 agtgtctctccatcttcccagtgctgcacccctttaatacagttcctcatgtcatgggga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 agtgtctctccatcttcccagtgctgcacccctttaatacagttcctcatgtcatgggga 140
Query: 481 ccctccctcccaaccataaactcatttttttaaagatttatttattattattat 534
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 139 ccctccctcccaaccataaacttatttttttaaagatttatttattattattat 86
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
