Query= MSMg01no338_f02.b1 MSMg01no338_f02.b1 CHROMAT_FILE:
MSMg01no338_f02.b1 PHD_FILE: MSMg01no338_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:55 2005
(673 letters)
>mm_chr1_187838830_187839904
Length = 1075
Score = 1205 bits (623), Expect = 0.0
Identities = 659/671 (98%), Gaps = 2/671 (0%)
Strand = Plus / Minus
Query: 5 gaattctttcttat-cacctaggtgccctcagagaaatgctttataatccaaagaaatgt 63
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 gaattccttcttatgaacctaggtgccctcagagaaatgctttataatccaaagaaatgt 816
Query: 64 ttactttggattccgtttctcttgtacttttcacttgtgaccttaggagtgagctcgcga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ttactttggattccgtttctcttgtacttttcacttgtgaccttaggagtgagctcgcga 756
Query: 124 ctggaagaaaatctgtcttctgtctctactattaaataattacctacgcactg-aaaacc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 755 ctggaagaaaatctgtcttctgtctctactattaaataattacctacgcactgaaaaacc 696
Query: 183 cacacaagactcacagtggccttgtcccaaggagatgctttgtggaacggttgaaattat 242
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 695 cacacaagactcacagtggccttgtcccaaggagatgctttgtggaatggttgaaattat 636
Query: 243 atttatgatgtttgcaaactttagctcaactgctgagatagttcaatgcagtaactagca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 atttatgatgtttgcaaactttagctcaactgctgagatagttcaatgcagtaactagca 576
Query: 303 tgcttctagtattcaactttgctctgtagcatgctgcaatcactgagtgtgatccagcat 362
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tgcttccagtattcaactttgctctgtagcatgctgcaatcactgagtgtgatccagcat 516
Query: 363 gtgtctctgaggggagaagtagtgggccgttttttgatactatgattgtatttggcaggc 422
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 515 gtgtttctgaggggagaagtagtgggccattttttgatactatgattgtatttggcaggc 456
Query: 423 atctcagacagaaaccctgtctcagccccttaggactacaatttcatcgtgaagtgtgag 482
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 455 atctcagacagaaaccctgtctcagcctcttaggactacaatttcatcgtgaagtgtgag 396
Query: 483 aaggtctcctgaatggagaaatagcacacagtcacgaagagcctagcttgcaaatggctg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aaggtctcctgaatggagaaatagcacacagtcacgaagagcctagcttgcaaatggctg 336
Query: 543 ttgtggcttttcattggcattgattggactgtttgaagactttagtttccatcatcaatg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttgtggcttttcattggcattgattggactgtttgaagactttagtttccatcatcaatg 276
Query: 603 gaatctagtgattttcactaatgtatttatgaaagagacttcaatacgtcaggatggcat 662
||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||
Sbjct: 275 gaatctagtgattttcactaatggatttatgaaagcgacttcaatatgtcaggatggcat 216
Query: 663 ttctgaaatcc 673
|||||||||||
Sbjct: 215 ttctgaaatcc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1075
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1065
Effective search space: 706095
Effective search space used: 706095
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_f02.g1 MSMg01no338_f02.g1 CHROMAT_FILE:
MSMg01no338_f02.g1 PHD_FILE: MSMg01no338_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:55 2005
(598 letters)
>mm_chr1_187660017_187661013
Length = 997
Score = 1056 bits (546), Expect = 0.0
Identities = 585/598 (97%), Gaps = 1/598 (0%)
Strand = Plus / Plus
Query: 1 tctagcgctgagtggtcggctggcccagcttccatggctggtgagccatcctgtctcaaa 60
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 201 tctagcgctgagtggtcggctggcccggcttccatggctggtgagccattctgtctcaaa 260
Query: 61 attccacaggtggacaaagtctaagggtagcagtttgtgattgtcctttgacttccatgt 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 attccacaggtggacaaagtctaagggtagcagtttgtggttgtcctttgacttccatgt 320
Query: 121 gcattcacacatacatgaatgtgtgtgtgtacatgtgcacatgtgtaccccctaatacat 180
||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 gcactcacacatgcatgaatgtgtgtgtgtacatgtgcacatgtgtaccccc-aatacat 379
Query: 181 gagtgttcacatgcatacttgcaacatgcctaccatgtgtttagggattgtggacatggt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 380 gagtgttcacatgcatacttgcaacatgcctaccatgtgtttagggattgtgaacatggt 439
Query: 241 gtgtgccatatgccacataaataatttgtgcttttcatgatgactacagctcacagaaaa 300
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 440 atgtgccatatgccacataaataatttgtgcttttcatgatgagtacagctcacagaaaa 499
Query: 301 acaactgtaatatcagagctgctgcaatccttcactttgtatgctccatgcagccattaa 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 500 acaactgtaatatcagagctgctgcaatccttcactttgtatgttccatgcagccattaa 559
Query: 361 tcttacccctaaacaagtgaccttggctgctcctttggctcacgatgaagctcagccgtt 420
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 560 tcttacccctaaacaagtggccttggctgctcctttggctcacgatgaaactcagccgtt 619
Query: 421 tgctctgagtcgtaatgataggatgtgaggcaaagcagagctctggcttgtttatgtttc 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgctctgagtagtaatgataggatgtgaggcaaagcagagctctggcttgtttatgtttc 679
Query: 481 ttaattagtctccctcattgagcctctccgtctccaggcacaattaaaatgttctgtgtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttaattagtctccctcattgagcctctccgtctccaggcacaattaaaatgttctgtgtt 739
Query: 541 tcttcaatacaccaagcggctctcagtcaccaactgcaccagaaccccaaacggatga 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tcttcaatacaccaagcggctctcagtcaccaactgcaccagaaccccaaacggatga 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 997
Length adjustment: 10
Effective length of query: 588
Effective length of database: 987
Effective search space: 580356
Effective search space used: 580356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
