Query= MSMg01no338_f07.b1 MSMg01no338_f07.b1 CHROMAT_FILE:
MSMg01no338_f07.b1 PHD_FILE: MSMg01no338_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:56 2005
(612 letters)
>mm_chr1_195568198_195569209
Length = 1012
Score = 951 bits (492), Expect = 0.0
Identities = 599/686 (87%), Gaps = 78/686 (11%)
Strand = Plus / Plus
Query: 5 gaattcaaaagatcttctgtgtctgaagctcaacagaaaagtgaatgtttaacatgcaca 64
|||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gaattcaaaagaccatatgtgtctgaagctcaacagaaaagtgaatgtttaacatgcaca 186
Query: 65 agctcatgggcttcatccctacaaaaatgaaagagtagcagcaggaagtagaaagggaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 agctcatgggcttcatccctacaaaaatgaaagagtagcagcaggaagtagaaagggaag 246
Query: 125 agaaggaagtagaggaaggggaggaggaag------------------------------ 154
||||||||||||||||||||||||||||||
Sbjct: 247 agaaggaagtagaggaaggggaggaggaagagtaagaggaggaagaagggtaagaggaag 306
Query: 155 ------------------------------------------------gggaggaaaggt 166
||||||||||||
Sbjct: 307 gggaggaggaaggggaggaggaaggggaggaggaaggggaggaggaaggggaggaaaggt 366
Query: 167 cagggtagcctctgtctatcttttgtccctaaggcatggctggacttctgtgttcaccct 226
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 367 cagggtagcctctgtctatcttttgtccctaaggcatggctggacttctgtgctcaccct 426
Query: 227 tgctcttgttctcgctctttctcatgtgctttctgtataatggagcaggctattatatct 286
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 427 tgctcttgttctcgctctttctcatgtgctttctgtataatggagcaggctagcatatct 486
Query: 287 agttcatggctagattttgtgacccttctgtgtgatcaaggtatcattttcaatatcctg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agttcatggctagattttgtgacccttctgtgtgatcaaggtatcattttcaatatcctg 546
Query: 347 tactcctcttctctttggtggttgattgcaagccatcttccttgtttgtttgatgacttt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tactcctcttctctttggtggttgattgcaagccatcttccttgtttgtttgatgacttt 606
Query: 407 gtttgctccttgcaggtcacaatcctacaaacagttctgttcatgtcttctctaggtgtg 466
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 607 gtttgctccttgcaggtcacaatcctacaaacagctctgttcatgtcttctctaggtgtg 666
Query: 467 tgtctccctacaagtctcaaatatgtagccttctaatttccctctgtggatggtcctcta 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 667 tgtctccctacaagtctcaaatatgtagccttctaatttccctctgtggatggtcttcta 726
Query: 527 gcatcagttatctcttgatgacttgttttatttcacttaagcttttgcttgcataggtat 586
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 727 gcatcagttatctcttgatgacttgttttatttcacttaagctttcgcttgcataggtat 786
Query: 587 acaatctattcacatgcttgacacta 612
||||||||||||||||||||||||||
Sbjct: 787 acaatctattcacatgcttgacacta 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_f07.g1 MSMg01no338_f07.g1 CHROMAT_FILE:
MSMg01no338_f07.g1 PHD_FILE: MSMg01no338_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:56 2005
(592 letters)
>mm_chr1_195699884_195700876
Length = 993
Score = 973 bits (503), Expect = 0.0
Identities = 539/551 (97%), Gaps = 3/551 (0%)
Strand = Plus / Minus
Query: 1 tgtgattaaaaatgttaatagtagtatcaccaagattttagtatcctgatcactctcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tgtgattaaaaatgttaatagtagtatcaccaagattttagtatcctgatcactctcatt 490
Query: 61 taagattttagccaattaagtagaagtgaaaatatctagttagagccccatgtctataga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 taagattttagccaattaagtagaagtgaaaatatctagttagagccccatgtctataga 430
Query: 121 tagactcctcctatgaggcacttctgaaaagcataagaagaaacaaagggatggctgaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tagactcctcctatgaggcacttctgaaaagcataagaagaaacaaagggatggctgaaa 370
Query: 181 tgtggtgacatgttttcacacaggaataaggcagtgactttggg-aaaatatctatattt 239
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 369 tgtggtgacatgttttcacacaggaataaggcagtgactttgggaaaaatatctatattt 310
Query: 240 gagttatcattagaatgtcgaaagaggattagagagacactgatatcacttcctgaagac 299
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 309 gagttatcattagaatgtcgaaagaggattagggagacactgatatcgcttcctgaagat 250
Query: 300 actgcagtaacctaatagcattgctgtgtccttatatacaccaaaaatctgtagtggcaa 359
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 attgcaggaacctaatagcattgctgtgtccttatatacaccaaaaatctgtagtggcaa 190
Query: 360 ttttggaattttggtttctttaaaaaaatagaaatattataagaatatattttcatttta 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttttggaattttggtttc-ttaaaaaaatagaaatattataagaatatattttcatttta 131
Query: 420 atcccaggtgtgggatatggagctgcttcaggttgtccacagcacctgactatgatttgc 479
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||
Sbjct: 130 atcccaggtgtgggatatggggctgcttcaggttgtccacagcagctgactatga-ttgc 72
Query: 480 ctggtgctctatctagcaggggtatggtttagctgcagagagtttatacaattgtgggac 539
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ctggggctctgtctagcaggggtatggtttagctgcagagagtttatacaattgtgggac 12
Query: 540 atttggaattc 550
|||||||||||
Sbjct: 11 atttggaattc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 993
Length adjustment: 10
Effective length of query: 582
Effective length of database: 983
Effective search space: 572106
Effective search space used: 572106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
