Query= MSMg01no339_a04.b1 MSMg01no339_a04.b1 CHROMAT_FILE:
MSMg01no339_a04.b1 PHD_FILE: MSMg01no339_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:46 2005
(592 letters)
>mm_chr1_88937525_88938516
Length = 992
Score = 1098 bits (568), Expect = 0.0
Identities = 582/588 (98%), Gaps = 4/588 (0%)
Strand = Plus / Minus
Query: 7 ggaattcttcacaatcc--tctgtcaagagcaaagcattaacttaaatcctgtcaccaac 64
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ggaattcttcacaa--cagtctgtcaagagcaaagcattaacttaaatcctgtcaccaac 735
Query: 65 caagaggatgcacggaacaaagttcccacttctgggtgcagataaggctcgttagtgtcc 124
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 734 caagaggatgcacggaacaaagttcccacttctgggtgcggataaggctcgttagtgtcc 675
Query: 125 tagggtggtttgaggaaatgatcttaaaatcctctcatcctgcaagtggaaggggaagga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tagggtggtttgaggaaatgatcttaaaatcctctcatcctgcaagtggaaggggaagga 615
Query: 185 gcaagcatgtgcacatcacaaaggacccagcgatactctggcccaggagctcccagactc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gcaagcatgtgcacatcacaaaggacccagcgatactctggcccaggagctcccagactc 555
Query: 245 ccaggaggcccaggatctagaagatctagaactgacaggctgagacatggccaaaccagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ccaggaggcccaggatctagaagatctagaactgacaggctgagacatggccaaaccagc 495
Query: 305 agcagccagagctccactgaacttaagattccctgtggggccaatcacccacggaggggt 364
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 494 agcagccagagctccactgaacttaagattccctgtggggccaatcacccatggaggggt 435
Query: 365 gcacagatctctcctctcacctggggctagccaaggcccctcttgctggcacctgtctac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gcacagatctctcctctcacctggggctagccaaggcccctcttgctggcacctgtctac 375
Query: 425 ccttgtgcagttctcacagtgatcagcagggggccaccagactcttctgttccagtcctg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ccttgtgcagttctcacagtgatcagcagggggccaccagactcttctgttccagtcctg 315
Query: 485 ggacgtggcaaaagccacttagaacccaagaactttctgggaagaatagctcgagagttt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ggacgtggcaaaagccacttagaacccaagaactttctgggaagaatagctcgagagttt 255
Query: 545 acaaattgtggcccaaagtccaggggtccctggagtgccagttgctgt 592
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 acaaattgtggcccaaagtccaggggtccctggagtgccagttgctgt 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_a04.g1 MSMg01no339_a04.g1 CHROMAT_FILE:
MSMg01no339_a04.g1 PHD_FILE: MSMg01no339_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:46 2005
(533 letters)
>mm_chr1_88717300_88718232
Length = 933
Score = 982 bits (508), Expect = 0.0
Identities = 526/532 (98%)
Strand = Plus / Plus
Query: 2 tttatccttttctaacatgctgattgcttatatgtgatgagatttcggaagcagcctgga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tttatccttttctaacatgctgattgcttatatgtgatgagatttcggaagcagcctgga 261
Query: 62 actttctagtattcaagccttttgggagaggggatgaaaatttagatcagattcctgaga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 actttctagtattcaagccttttgggagaggggatgaaaatttagatcagattcctgaga 321
Query: 122 agatggcatcttgaagacttagagtactagccgggcattgctggcttgcttatttaccta 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agatggcatcttgaagacttagagtactagccgggcattgctggcttgcttatttaccta 381
Query: 182 gggtagtctgtgcatcaggagaataaaggtctattttttccagtcatatattaagaatat 241
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 382 gggtagtctgtgcatcaggagaataaaggtctattttttccaatcatatattatgaatat 441
Query: 242 ctagtattgtcagtggctttcagtgttttagaagggttttcttctcctttattcaggcag 301
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 442 ctagtattatcagtggctttcagtgttttagaagagttttcttctcctttattcaggcag 501
Query: 302 ttaaaccagagagcaacgacaaagaaatagaagctacttatgaagctgacatccctgaag 361
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttaaaccagagagcaatgacaaagaaatagaagctacttatgaagctgacatccctgaag 561
Query: 362 agggctgtggacatcaccccctgcagcagtccccgaaaggctggagtggtcctgatgtca 421
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 562 agggctgtggacatcaccccctgcagcagtcccggaaaggctggagtggtcctgatgtca 621
Query: 422 ttatagaggctcagtttgatgacagcgactcagaagatagacatggcaacaccagtggcc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttatagaggctcagtttgatgacagcgactcagaagatagacatggcaacaccagtggcc 681
Query: 482 tggttgatggtgttaagaaattgtcaatctctactcctgacagaggtgagtc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tggttgatggtgttaagaaattgtcaatctctactcctgacagaggtgagtc 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
