BAC Information

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BAC

Clone NameMSMg01-339G23
Chromosome1 (Build37)
Map Location 67,817,482 - 67,817,866
singlet/doubletsinglet
Overlap genenone
Upstream gene1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
Downstream geneErbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339G23.T7 (MSMg01no339_g23.b1)MSMg01-339G23.TJ (MSMg01no339_g23.g1)
ACCAG453721AG453722
length759775
length of high quality
(start - end)
472 (47 - 518)385 (79 - 463)
definitionCHROMAT_FILE: MSMg01no339_g23.b1 PHD_FILE: MSMg01no339_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:16 2005CHROMAT_FILE: MSMg01no339_g23.g1 PHD_FILE: MSMg01no339_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTAAGGATTTTCTTAATTTCCTCTTTAGGGACCATATCTGTTAG
TTTGTTTTTTCAATTCTCATGGCCTACTTAGAAGGATTTCTGAGCTCTAG
CAGATACACTGTGTTCTGGTTGTTATTGCATTTTTATGTGTGTGCCCAGG
CCTTTGGGTTTGGGAAGACTGTAATTCTAGGTGCTGATAGATGGCCTTCT
GTTCATTGGGTAGATGTGTTTCCTTGGTTTCTGTTTTTATCTCTGTTTCT
TAGGAGGGTGTGGTGGCTGTATTTTATTTCCTATGTGTGTGTATTATCCA
TGTAAACACATCTTTATAAGTGCCATTGGAGGCCAGAAGAAAATGTAGGA
AACTAATACTGGAGTTACATATGGTTGTGATCTGCCAGACATGGATGCTA
GGAAATAATGTCCTCTGAAATGAGCAGCAGGCACTCCTACCTGCCGAGCC
AGCCATCTCTCCAGCAGACTCAAATGTTATATTACAACAATGAAGAATAC
AGGCTGAAAGACAGAGTATCCAGGAGTTCATATCTGAAAAAGTTGAATTT
ACTTANCCGCTGCGTATTTTTTGGCAAATTGTTAAGTTATTGCAAAACCC
ATTTATTGCCATTAATTGTTTCCCTTGGACTTTAGGGAAAATATCCTCCT
GGCCCCCCGGGATAAAGCCATTTCAGCCGAATAATTATATTAAAAGAGGG
TTTTGTGGA
NNCCAATGCTANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGACAGAGAGGGATATATATT
GAGATCCTGCTGAAGATAACAAAATAAAAATAAAAACAACTGTAGTAAAC
TCAAATGAGCATGTTTAAAGACAATTATTATGTTACAGGGCAAAGATGGA
CAGCTTGTGAGGCTTGGCATCACATGAAACTGTTTAATTTAAATACCACT
TTTGTATTATCATTTTCTCTCACTCTCACCTTGCCATAATCATTTATTTT
ATGTTCTTCTCTTGCCTCCAGAAAATTCTTCCCTAAGAGATTGGTAGCAG
TGCCCAGAGTATGGGTATGTTACTGCCCTACTTTCTGTTTCTGCTACTGA
AATAGGAGTGCACCAAGGAAGTTGACACTCATCAGAACATTGAGACATAG
AAAAAGCATTTTANAGACTCAGATTTAGATTTTAATTTTGAGTTCATTTT
TTTTCAGACCCTAGNATGTTTATAGTGGGAGCATATTTCAATTTAAAAGG
ANGAAAAGAAAAGCTGATTATTATCCCTGAACTTTGGGCAATAGCCCCTT
CCCCTCTCAAAAAAAAAGGCCCATTTCCCGAAAAAAGAAATTCCCGAAAG
GTAATGGGTTACCCAAAACCTCCATTCTGCCTTGGGCCTCCCGGAGCCCC
CCCAAAGAAAGGGGGGGAAGGGTTTTTTTTTTTTTATGCCCCAGGGCCCC
CGAAAAAAAACTTGATCACAGGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_g23.g1 MSMg01no339_g23.g1 CHROMAT_FILE:
MSMg01no339_g23.g1 PHD_FILE: MSMg01no339_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:16 2005
         (385 letters)



>mm_chr1_67817282_67818066
          Length = 785

 Score =  745 bits (385), Expect = 0.0
 Identities = 385/385 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggacagagagggatatatattgagatcctgctgaagataacaaaataaaaataaaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggacagagagggatatatattgagatcctgctgaagataacaaaataaaaataaaaaca 260

                                                                       
Query: 61  actgtagtaaactcaaatgagcatgtttaaagacaattattatgttacagggcaaagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgtagtaaactcaaatgagcatgtttaaagacaattattatgttacagggcaaagatg 320

                                                                       
Query: 121 gacagcttgtgaggcttggcatcacatgaaactgtttaatttaaataccacttttgtatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacagcttgtgaggcttggcatcacatgaaactgtttaatttaaataccacttttgtatt 380

                                                                       
Query: 181 atcattttctctcactctcaccttgccataatcatttattttatgttcttctcttgcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcattttctctcactctcaccttgccataatcatttattttatgttcttctcttgcctc 440

                                                                       
Query: 241 cagaaaattcttccctaagagattggtagcagtgcccagagtatgggtatgttactgccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagaaaattcttccctaagagattggtagcagtgcccagagtatgggtatgttactgccc 500

                                                                       
Query: 301 tactttctgtttctgctactgaaataggagtgcaccaaggaagttgacactcatcagaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactttctgtttctgctactgaaataggagtgcaccaaggaagttgacactcatcagaac 560

                                    
Query: 361 attgagacatagaaaaagcatttta 385
           |||||||||||||||||||||||||
Sbjct: 561 attgagacatagaaaaagcatttta 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)