MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-339P02
Chromosome	1 (Build37)
Map Location	167,523,167 - 167,523,747
singlet/doublet	singlet
Overlap gene	Mpzl1
Upstream gene	Dpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625
Downstream gene	Rcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601
Link	Open Mouse BAC browser

Click to get alignment info.

name	Dpt (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56429 MGI:1928392
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Xcl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16963 MGI:104593
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700029M03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69476 MGI:1916726
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	Tbx19 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:83993 MGI:1891158
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sft2d2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108735 MGI:1917362
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tiprl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226591 MGI:1915087
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gpr161 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240888 MGI:2685054
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Iqwd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74106 MGI:1921356
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 30 ESTs, 1 Protein

name	Brp44 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70456 MGI:1917706
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sacy (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:271639 MGI:2660854
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppia-ps1-1625 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:606514
definition	note : peptidylprolyl isomerase A pseudogene 1_1625.1 pseudo : _no_value

name	Mpzl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68481 MGI:1915731
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Rcsd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226594 MGI:2676394
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Creg1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433375 MGI:1344382
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cd247 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12503 MGI:88334
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pou2f1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18986 MGI:101898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 4 mRNAs

name	LOC665409 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665409
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins pseudo : _no_value

name	Dusp27 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240892 MGI:2685055
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gpa33 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59290 MGI:1891703
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mael (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98558 MGI:2138453
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039795 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039795
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 22 ESTs, 1 Protein

name	Tada1l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27878 MGI:1196415
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pogk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71592 MGI:1918842
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040287 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040287
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 180 ESTs, 2 Proteins

name	EG226601 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226601 MGI:3643319
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 21 Proteins

name	Dpt (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130574 GeneID:56429 MGI:1928392
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dermatopontin transcript_id : NM_019759.2

name	Xcl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678711 GeneID:16963 MGI:104593
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C motif) ligand 1 transcript_id : NM_008510.1

name	1700029M03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149245314 GeneID:69476 MGI:1916726
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : RIKEN cDNA 1700029M03 gene transcript_id : XM_001474414.1

name	Tbx19 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363972 GeneID:83993 MGI:1891158
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : T-box 19 transcript_id : NM_032005.3

name	Sft2d2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802343 GeneID:108735 MGI:1917362
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SFT2 domain containing 2 transcript_id : NM_145512.3

name	Tiprl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801998 GeneID:226591 MGI:1915087
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TIP41, TOR signalling pathway regulator-like (S. cerevisiae) transcript_id : NM_145513.3

name	Gpr161 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487462 GeneID:240888 MGI:2685054
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor 161 transcript_id : NM_001081126.1

name	Iqwd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149245318 GeneID:74106 MGI:1921356
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 30 ESTs, 1 Protein product : IQ motif and WD repeats 1 transcript_id : XM_976438.2

name	Brp44 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803058 GeneID:70456 MGI:1917706
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : brain protein 44 transcript_id : NM_027430.2

name	Sacy (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801853 GeneID:271639 MGI:2660854
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : soluble adenylyl cyclase transcript_id : NM_173029.2

name	Mpzl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:140970932 GeneID:68481 MGI:1915731
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myelin protein zero-like 1 transcript_id : NM_001001880.2

name	Mpzl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:140969904 GeneID:68481 MGI:1915731
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myelin protein zero-like 1 transcript_id : NM_001083897.1

name	Rcsd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84781792 GeneID:226594 MGI:2676394
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RCSD domain containing 1 transcript_id : NM_001038846.1

name	Rcsd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84781799 GeneID:226594 MGI:2676394
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RCSD domain containing 1 transcript_id : NM_178593.3

name	Creg1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542419 GeneID:433375 MGI:1344382
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cellular repressor of E1A-stimulated genes 1 transcript_id : NM_011804.2

name	Cd247 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13624302 GeneID:12503 MGI:88334
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD247 antigen transcript_id : NM_031162.1

name	Pou2f1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114431253 GeneID:18986 MGI:101898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : POU domain, class 2, transcription factor 1 transcript_id : NM_198932.2

name	Pou2f1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114431251 GeneID:18986 MGI:101898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : POU domain, class 2, transcription factor 1 transcript_id : NM_011137.2

name	Pou2f1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114431255 GeneID:18986 MGI:101898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : POU domain, class 2, transcription factor 1 transcript_id : NM_198933.2

name	Pou2f1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114431257 GeneID:18986 MGI:101898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : POU domain, class 2, transcription factor 1 transcript_id : NM_198934.2

name	Dusp27 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368935 GeneID:240892 MGI:2685055
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dual specificity phosphatase 27 (putative) transcript_id : NM_001033344.2

name	Gpa33 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:11037799 GeneID:59290 MGI:1891703
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycoprotein A33 (transmembrane) transcript_id : NM_021610.1

name	Mael (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129866 GeneID:98558 MGI:2138453
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : maelstrom homolog (Drosophila) transcript_id : NM_175296.4

name	LOC100039795 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149245286 GeneID:100039795
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 22 ESTs, 1 Protein product : similar to C1orf32 putative protein transcript_id : XM_001473525.1

name	Tada1l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981395 GeneID:27878 MGI:1196415
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcriptional adaptor 1 (HFI1 homolog, yeast) like transcript_id : NM_030245.2

name	Pogk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31340927 GeneID:71592 MGI:1918842
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pogo transposable element with KRAB domain transcript_id : NM_175170.2

name	LOC100040287 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149245330 GeneID:100040287
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 180 ESTs, 2 Proteins product : similar to ubiquinol-cytochrome c reductase subunit transcript_id : XM_001475048.1

name	EG226601 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149245290 GeneID:226601 MGI:3643319
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 21 Proteins product : predicted gene, EG226601 transcript_id : XM_136366.6

name	Dpt (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9789943 CCDS:CCDS15437.1 GeneID:56429 MGI:1928392
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA] codon_start : 1 note : early quiescence protein-1 product : dermatopontin protein_id : NP_062733.1

name	Xcl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678712 CCDS:CCDS15438.1 GeneID:16963 MGI:104593
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA] codon_start : 1 note : lymphotactin; small inducible cytokine subfamily C, member 1 (lymphotactin) product : chemokine (C motif) ligand 1 protein_id : NP_032536.1

name	1700029M03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149245315 GeneID:69476 MGI:1916726
definition	codon_start : 1 product : hypothetical protein LOC69476 protein_id : XP_001474464.1

name	Tbx19 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:14030783 CCDS:CCDS15439.1 GeneID:83993 MGI:1891158
definition	GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0045165 - cell fate commitment [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : T-box 19 protein_id : NP_114394.1

name	Sft2d2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21704008 CCDS:CCDS15440.1 GeneID:108735 MGI:1917362
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_process : GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : SFT2 domain containing 2 protein_id : NP_663487.1

name	Tiprl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21704010 CCDS:CCDS15441.1 GeneID:226591 MGI:1915087
definition	codon_start : 1 product : TIP41, TOR signalling pathway regulator-like protein_id : NP_663488.1

name	Gpr161 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487463 GeneID:240888 MGI:2685054
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : G protein-coupled receptor 161 protein_id : NP_001074595.1

name	Iqwd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149245319 GeneID:74106 MGI:1921356
definition	codon_start : 1 note : overriding stop codons product : IQ motif and WD repeats 1 protein_id : XP_981532.2 transl_except : (pos:complement(167281286),aa:OTHER) transl_except : (pos:complement(167281215..167281216),aa:OTHER)

name	Brp44 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312594 CCDS:CCDS15442.1 GeneID:70456 MGI:1917706
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0003674 - molecular_function [Evidence IEA] codon_start : 1 product : brain protein 44 protein_id : NP_081706.1

name	Sacy (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370546 GeneID:271639 MGI:2660854
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS] GO_function : GO:0004016 - adenylate cyclase activity [Evidence TAS]; GO:0005488 - binding [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA] GO_process : GO:0009190 - cyclic nucleotide biosynthesis [Evidence IEA] codon_start : 1 exception : mismatches in translation note : adenylate cyclase 10; testicular soluble adenylyl cyclase product : soluble adenylyl cyclase protein_id : NP_766617.1

name	Mpzl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:140969905 GeneID:68481 MGI:1915731
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; protein zero-related product : myelin protein zero-like 1 isoform a protein_id : NP_001077366.1

name	Mpzl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:49457857 GeneID:68481 MGI:1915731
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; protein zero-related product : myelin protein zero-like 1 isoform b protein_id : NP_001001880.1

name	Rcsd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84781793 GeneID:226594 MGI:2676394
definition	codon_start : 1 note : isoform b is encoded by transcript variant 2 product : RCSD domain containing 1 isoform b protein_id : NP_001033935.1

name	Rcsd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84781800 GeneID:226594 MGI:2676394
definition	codon_start : 1 note : isoform a is encoded by transcript variant 1 product : RCSD domain containing 1 isoform a protein_id : NP_848708.2

name	Creg1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753520 GeneID:433375 MGI:1344382
definition	GO_component : GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0008134 - transcription factor binding [Evidence IDA] GO_process : GO:0001558 - regulation of cell growth [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA] codon_start : 1 product : cellular repressor of E1A-stimulated genes 1 protein_id : NP_035934.1

name	Cd247 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13624303 CCDS:CCDS15443.1 GeneID:12503 MGI:88334
definition	GO_component : GO:0042105 - alpha-beta T cell receptor complex [Evidence IDA]; GO:0005737 - cytoplasm [Evidence ISS]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence ISS]; GO:0042101 - T cell receptor complex [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence IPI] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] GO_process : GO:0007166 - cell surface receptor linked signal transduction [Evidence IEA] codon_start : 1 note : CD3-zeta/eta product : CD3 antigen, zeta polypeptide protein_id : NP_112439.1

name	Pou2f1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114431254 GeneID:18986 MGI:101898
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence ISS] GO_process : GO:0016481 - negative regulation of transcription [Evidence ISS]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform Z is encoded by transcript variant 2; ubiquitous transcription factor product : POU domain, class 2, transcription factor 1 isoform Z protein_id : NP_945150.2

name	Pou2f1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114431252 GeneID:18986 MGI:101898
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence ISS] GO_process : GO:0016481 - negative regulation of transcription [Evidence ISS]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform A is encoded by transcript variant 1; ubiquitous transcription factor product : POU domain, class 2, transcription factor 1 isoform A protein_id : NP_035267.2

name	Pou2f1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114431256 CCDS:CCDS15444.1 GeneID:18986 MGI:101898
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence ISS] GO_process : GO:0016481 - negative regulation of transcription [Evidence ISS]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform L is encoded by transcript variant 3; ubiquitous transcription factor product : POU domain, class 2, transcription factor 1 isoform L protein_id : NP_945151.2

name	Pou2f1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114431258 GeneID:18986 MGI:101898
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence ISS] GO_process : GO:0016481 - negative regulation of transcription [Evidence ISS]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform B is encoded by transcript variant 4; ubiquitous transcription factor product : POU domain, class 2, transcription factor 1 isoform B protein_id : NP_945152.2

name	Dusp27 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84370021 CCDS:CCDS15446.1 GeneID:240892 MGI:2685055
definition	GO_function : GO:0008138 - protein tyrosine/serine/threonine phosphatase activity [Evidence IEA] GO_process : GO:0006470 - protein amino acid dephosphorylation [Evidence IEA] codon_start : 1 exception : mismatches in translation product : dual specificity phosphatase 27 (putative) protein_id : NP_001028516.1

name	Gpa33 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11037800 CCDS:CCDS15447.1 GeneID:59290 MGI:1891703
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] codon_start : 1 note : A33 antigen product : glycoprotein A33 (transmembrane) protein_id : NP_067623.1

name	Mael (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424966 CCDS:CCDS15448.1 GeneID:98558 MGI:2138453
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : maelstrom homolog protein_id : NP_780505.1

name	LOC100039795 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149245287 GeneID:100039795
definition	codon_start : 1 product : similar to C1orf32 putative protein protein_id : XP_001473575.1

name	Tada1l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313610 CCDS:CCDS15450.1 GeneID:27878 MGI:1196415
definition	codon_start : 1 product : SPT3-associated factor 42 protein_id : NP_084521.1

name	Pogk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424772 GeneID:71592 MGI:1918842
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA] codon_start : 1 exception : mismatches in translation product : pogo transposable element with KRAB domain protein_id : NP_780379.1

name	LOC100040287 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149245331 GeneID:100040287
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475098.1

name	EG226601 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149245291 GeneID:226601 MGI:3643319
definition	codon_start : 1 product : flavin-containing monooxygenase 13 protein_id : XP_136366.6

name	(CDS detail)
type	STS
link
xref	UniSTS:116689
definition	standard_name : D1Mit35

name	(CDS detail)
type	STS
link
xref	UniSTS:116688
definition	standard_name : D1Mit269

name	(CDS detail)
type	STS
link
xref	UniSTS:123173
definition	standard_name : 13.MMHAP57FRE7.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:165117
definition	standard_name : AI574175

name	(CDS detail)
type	STS
link
xref	UniSTS:178502
definition	standard_name : AI661682

name	(CDS detail)
type	STS
link
xref	UniSTS:163268
definition	standard_name : D43769

name	(CDS detail)
type	STS
link
xref	UniSTS:116690
definition	standard_name : D1Mit507

name	(CDS detail)
type	STS
link
xref	UniSTS:108989
definition	standard_name : G49233

name	(CDS detail)
type	STS
link
xref	UniSTS:210530
definition	standard_name : RH136548

name	(CDS detail)
type	STS
link
xref	UniSTS:167292
definition	standard_name : D1Ertd754e

name	(CDS detail)
type	STS
link
xref	UniSTS:165116
definition	standard_name : AI506168

name	(CDS detail)
type	STS
link
xref	UniSTS:128824
definition	standard_name : D1Mit453

name	(CDS detail)
type	STS
link
xref	UniSTS:128923
definition	standard_name : D1Mit63

name	(CDS detail)
type	STS
link
xref	UniSTS:92704
definition	standard_name : D1S2526

name	(CDS detail)
type	STS
link
xref	UniSTS:235276
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:234256
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:128907
definition	standard_name : D1Mit539.1

name	(CDS detail)
type	STS
link
xref	UniSTS:128906
definition	standard_name : D1Mit539

name	(CDS detail)
type	STS
link
xref	UniSTS:142258
definition	standard_name : D1Mit539.2

name	(CDS detail)
type	STS
link
xref	UniSTS:165119
definition	standard_name : AI844869

name	(CDS detail)
type	STS
link
xref	UniSTS:158880
definition	standard_name : AA755314

name	(CDS detail)
type	STS
link
xref	UniSTS:128481
definition	standard_name : D1Mit144

name	(CDS detail)
type	STS
link
xref	UniSTS:124852
definition	standard_name : J03297

name	(CDS detail)
type	STS
link
xref	UniSTS:271854
definition	standard_name : PMC197251P5

name	(CDS detail)
type	STS
link
xref	UniSTS:178503
definition	standard_name : J04967

name	(CDS detail)
type	STS
link
xref	UniSTS:119905
definition	standard_name : RH94658

name	(CDS detail)
type	STS
link
xref	UniSTS:178499
definition	standard_name : AW552088

name	(CDS detail)
type	STS
link
xref	UniSTS:141281
definition	standard_name : Cd3z

name	(CDS detail)
type	STS
link
xref	UniSTS:163269
definition	standard_name : L03353

name	(CDS detail)
type	STS
link
xref	UniSTS:158879
definition	standard_name : X68362

name	(CDS detail)
type	STS
link
xref	UniSTS:108991
definition	standard_name : Pou2f1

name	(CDS detail)
type	STS
link
xref	UniSTS:273111
definition	standard_name : PMC321444P1

name	(CDS detail)
type	STS
link
xref	UniSTS:234259
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:185456
definition	standard_name : BB116197

name	(CDS detail)
type	STS
link
xref	UniSTS:178504
definition	standard_name : AU019877

name	(CDS detail)
type	STS
link
xref	UniSTS:128763
definition	standard_name : D1Mit401

name	(CDS detail)
type	STS
link
xref	UniSTS:108988
definition	standard_name : G49232

name	(CDS detail)
type	STS
link
xref	UniSTS:167275
definition	standard_name : C86954

name	(CDS detail)
type	STS
link
xref	UniSTS:234261
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:164137
definition	standard_name : AI852300

name	(CDS detail)
type	STS
link
xref	UniSTS:234258
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:108987
definition	standard_name : G49231

name	(CDS detail)
type	STS
link
xref	UniSTS:158881
definition	standard_name : C79449

name	(CDS detail)
type	STS
link
xref	UniSTS:167262
definition	standard_name : RH126668

name	(CDS detail)
type	STS
link
xref	UniSTS:125080
definition	standard_name : MHAa21c1.seq

name	LOC665409 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149245283 GeneID:665409
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins product : similar to RNA polymerase II transcription factor SIII p18 subunit pseudo : _no_value transcript_id : XR_031258.1

clone name	MSMg01-471M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183I02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-447O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265M02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-444E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-320I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534L01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-084O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-263N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-192A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-527B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-107A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-217O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-192P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-163E06
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-067J08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-438I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349B14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071E17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206J16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229G15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197A03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038K24
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-339P02.T7 (MSMg01no339_p02.b1)	MSMg01-339P02.TJ (MSMg01no339_p02.g1)
ACC	AG454104	AG454105
length	746	718
length of high quality (start - end)	595 (73 - 667)	581 (56 - 636)
definition	CHROMAT_FILE: MSMg01no339_p02.b1 PHD_FILE: MSMg01no339_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:53 2005	CHROMAT_FILE: MSMg01no339_p02.g1 PHD_FILE: MSMg01no339_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:53 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	NNTTCCTATAGAGGGGGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CGCGGAATTCATGAGTTTCCTAGGCAAATGGATAGAACTAGAAAATATCA TCCTGAGTGAGGTAACCCAGTTGCAAAAGAACACATGGTATGTACTCACT GATAAGTGGATATTAGCCCGAAAGCTCCAAATAACCAAGATACAATTCAT AGACCACATGAAGCTCAAGAAGAAGGAAGACCAAAGTGTGGGTGCTTCGG TCCTTCTTAGAAGGGGGAACAAATTACCCATGGAAGGGGCTATAGAGACA AAATGTAGAGCAGAGACTGAAGGTATGACCATCCAGAGACTGCCCATCTT AGAATTCATCCCATATACAGTTACCAAACCCAGACACTATTGTGGATGCC AAGAAGAGCATGCTGAAAGGAGCCTGATATGGCTGTCCCTTGAGAGGCCC TGCCAGAGCCTTACAAATACAGAGACGGACACTCGCAGCCAACCATTGGA CTGAGCACGGGGTCCGCAAAAGAGGAGTTAGAGAAAGGACTGAAGGAGTT GAAGGGGATTGCAACCCCACAGGAAGAACAACATTATCAATCAACCAGTC CCCCAAGAGCTCCCAGGGACTAAACCATTAGCAAAAGAATACACACACAT GGCTCTAGCTGCATGTGTAGCAGAGGATGGCCTTGTCAAGCATCCCAGGG AGGAGAGAGGCCTTGGTCCTATGAAAGCTCAAAAGATGCCCCAGGN	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXCCTCATATAAAGAAAAGCATCAACACTAACTTCTCAGACTGTCCT CGGGTGGCGTGGTTAACGGACGGTGTCTATCAGCTAGCACGGGCACAGAA CAAAACGGTCCTGATACTGTGAGAGACACACTTCCACTGAACACCTCACT CTCTAACTACAAGAAATGCTTAGACTGGTTGAGCCCTTAGATGAAAAAGG CCACGTCTGTCGGAAAGACTAACGGTTCTGCAGAGTCTTCAATAAGGCAA ACCATCCCACGCATGGGACCACGGGATGCTTCTGAAACTTTCCAGCTAGA AATGACTCTGAAAGAATATACAGAAACAGCAAGACAATTTACACATACGT AGACTCATACCACTTCACCATGCAACGTTGGCCTCTCACATCAGGAAGAT TAAATAGAATATACATATCCTCTATACATATTTTCTGCTCTCTCCGAGTA TACATGTGCTTGTCCTTGCCCGAGTCCTCAAGGCCACATGCGGTTATGGA CATTTTCTGCACAAGCGTCCAGTTTGGAAATGTTTGGGTGTTCTCTTAGT CTTTCCGGATGTCCGCATACACAACCGACTCTGACTTATTAATCTTGCCG CTGTGGTGTCCGCCAGAGTGGTCTAACTGTGCGTAAATGACTGGGCCCTG GAGAAGAGAACCAATTAA
quality values	Open. Hide. 0 0 3 6 6 6 8 8 8 8 8 8 9 12 11 9 9 12 12 19 29 37 30 23 16 11 11 11 18 11 15 10 10 10 18 9 16 12 21 11 11 11 11 12 12 20 21 22 22 19 23 12 12 11 21 21 31 31 33 30 27 22 13 7 6 6 7 18 14 12 12 9 18 18 33 34 37 37 37 39 39 39 53 50 53 48 34 30 21 15 17 34 27 53 57 47 47 47 43 43 43 43 57 57 57 57 68 68 68 68 68 68 59 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 57 57 57 57 57 57 50 51 50 50 50 57 57 57 57 57 48 46 50 50 50 50 68 68 68 50 50 50 50 50 51 57 57 52 52 52 57 59 57 57 57 57 57 57 57 54 57 57 57 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 59 68 68 68 68 57 57 57 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 47 43 43 39 39 39 43 59 44 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 59 68 68 68 68 68 68 68 68 59 68 59 59 59 59 59 59 57 57 57 57 54 57 57 57 57 68 59 59 59 59 59 59 59 68 68 68 68 57 57 57 57 57 57 57 57 57 57 59 54 54 54 57 57 57 57 57 57 57 57 57 48 48 57 57 59 59 54 54 57 59 59 48 48 48 57 57 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 59 59 57 68 68 68 68 68 57 57 54 54 57 59 57 57 57 57 57 54 57 59 57 48 59 59 59 59 59 57 57 57 57 57 57 57 59 48 48 48 48 47 47 47 47 39 39 39 37 37 37 37 44 44 41 37 44 59 44 41 41 37 37 37 37 37 37 47 43 41 34 30 37 37 37 37 39 41 44 41 41 43 37 37 41 41 41 41 43 43 41 39 39 35 31 31 39 35 28 28 36 32 41 41 41 41 41 37 32 30 27 28 32 39 39 37 37 37 37 37 32 37 26 26 27 22 21 16 16 17 17 22 25 34 34 31 31 39 32 32 36 36 35 31 31 33 33 24 24 23 23 20 23 23 28 23 25 17 25 14 26 28 31 30 28 28 28 23 23 32 20 19 14 26 22 24 24 14 14 12 10 9 11 9 9 9 9 9 10 11 12 12 16 13 24 37 33 36 32 28 25 25 16 13 11 10 10 12 14 11 11 11 15 13 19 19 22 25 25 16 17 10 10 10 10 15 20 28 22 14 10 10 10 15 11 18 18 21 16 11 11 11 10 10 10 11 19 10 8 10 3 0	Open. Hide. 32 37 37 37 41 47 47 47 59 29 30 20 18 14 11 11 9 11 15 10 11 12 19 21 37 37 37 39 28 23 12 12 15 27 21 42 34 23 13 8 6 6 6 10 15 27 30 47 47 37 37 41 47 53 57 57 50 50 50 50 50 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 53 54 54 50 50 57 68 57 57 57 50 50 50 50 50 48 57 59 59 57 48 57 57 48 48 68 68 68 59 59 68 68 68 68 68 68 68 59 57 57 57 57 57 57 57 59 57 57 57 57 57 57 57 57 57 54 54 57 57 57 68 68 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 57 57 57 57 54 57 50 50 50 50 50 57 59 57 57 57 57 57 57 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 68 57 57 57 57 59 59 59 59 57 59 59 59 59 59 59 68 68 68 68 68 68 68 57 57 62 62 62 62 44 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 44 44 43 62 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 62 62 62 62 43 52 52 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 57 59 59 59 59 59 57 68 68 57 57 57 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 54 54 59 59 59 59 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 57 59 68 68 59 59 57 47 47 42 42 35 47 47 59 59 59 48 48 48 59 59 59 48 57 57 59 59 59 59 59 59 57 57 48 48 48 48 41 41 40 39 39 39 41 37 37 41 43 44 47 47 59 44 37 31 31 37 37 39 43 46 46 46 48 44 59 41 40 34 36 33 36 35 31 31 39 59 47 39 39 39 37 32 37 39 39 37 41 37 37 17 15 10 9 9 19 21 32 23 30 17 17 17 28 28 35 19 19 13 13 13 21 21 30 38 34 34 24 24 12 10 10 13 14 18 27 41 41 30 27 12 12 12 16 16 30 28 35 30 30 30 29 29 23 23 23 22 20 23 18 18 24 22 23 23 20 20 25 19 19 28 21 22 11 11 11 12 8 8 8 8 9 13 17 15 12 12 11 10 9 9 9 10 10 15 10 10 10 10 8 11 10 17 10 10 10 14 9 14 16 16 25 23 19 18 18 12 16 16 18 12 10 10 9 10 9 9 9 9 9 12 13 15 14 14 18 19 22 18

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no339_p02.g1 MSMg01no339_p02.g1 CHROMAT_FILE:
MSMg01no339_p02.g1 PHD_FILE: MSMg01no339_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:53 2005
         (581 letters)



>mm_chr1_167522967_167523947
          Length = 981

 Score = 1108 bits (573), Expect = 0.0
 Identities = 579/581 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcatataaagaaaagcatcaacactaacttctcagactgtcctcgggtggcgtggtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcatataaagaaaagcatcaacactaacttctcagactgtcctcgggtggcgtggtta 260

                                                                       
Query: 61  acggacggtgtctatcagctagcacgggcacagaacaaaacggtcctgatactgtgagag 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accgacggtgtctatcagctagcacgggcacagaacaaaacggtcctgatactgtgagag 320

                                                                       
Query: 121 acacacttccactgaacacctcactctctaactacaagaaatgcttagactggttgagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacacttccactgaacacctcactctctaactacaagaaatgcttagactggttgagcc 380

                                                                       
Query: 181 cttagatgaaaaaggccacgtctgtcggaaagactaacggttctgcagagtcttcaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttagatgaaaaaggccacgtctgtcggaaagactaacggttctgcagagtcttcaataa 440

                                                                       
Query: 241 ggcaaaccatcccacgcatgggaccacgggatgcttctgaaactttccagctagaaatga 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 ggcaaaccatcccacgcatgggaccacgggatgcttctaaaactttccagctagaaatga 500

                                                                       
Query: 301 ctctgaaagaatatacagaaacagcaagacaatttacacatacgtagactcataccactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctgaaagaatatacagaaacagcaagacaatttacacatacgtagactcataccactt 560

                                                                       
Query: 361 caccatgcaacgttggcctctcacatcaggaagattaaatagaatatacatatcctctat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caccatgcaacgttggcctctcacatcaggaagattaaatagaatatacatatcctctat 620

                                                                       
Query: 421 acatattttctgctctctccgagtatacatgtgcttgtccttgcccgagtcctcaaggcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acatattttctgctctctccgagtatacatgtgcttgtccttgcccgagtcctcaaggcc 680

                                                                       
Query: 481 acatgcggttatggacattttctgcacaagcgtccagtttggaaatgtttgggtgttctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acatgcggttatggacattttctgcacaagcgtccagtttggaaatgtttgggtgttctc 740

                                                    
Query: 541 ttagtctttccggatgtccgcatacacaaccgactctgact 581
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttagtctttccggatgtccgcatacacaaccgactctgact 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information