NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGGACAGCCTGCTCTGTGTAGCTACTTCTAGGCCAGTTAGAGC
TATGTGGTGAGACCTTGTCCCTTCCCCATTCTCTACTCCAAAAAGGGTAT
GATCAAGATACATTGTATACATGTGTGAAATTTTCAGAGAGTTAAAAGAC
CGGCTTTCAAATGGGACTCTTGGTTTGAAAAAGTGTACTCATGTGATTGC
CTGGAAAGAACATTTTTCTTTACAATTTACACTTGGTATAGGGTTTTCTA
CAGGGCCCTTTAGATCCAGAACCCAGCTTAACAGAGAAATACTGAAATGT
GTGGCACAAACTCCCCATTTTTTCTACAGTTGAACATGAATATTTGATGA
TAGCTGTAAAATCTTGAAATGGGTCATCTCATAGATATTTCTGTGCCTTT
TGAACTGTTGATTAAAGTGAAAATACAGTTTCTTCTCCTAATGTTTTGAG
GAAGGTGCTACTTGGAGAATATAGAAACTTTTTTTCTTTTTGTAAGGAAT
ATTTTAATTTATTCGTTGACAATTTCATACGTTTATACAATGTGACTTGG
ACATAGCCATCCCCCAACTCCCATCTTCTATAATCCTCCAAACACAGGCC
TCCCTACCTGTCCTTTTCTATTTTTTAAATAGTTCCTTGTGGTTTAGTAA
TACTGCCCTGTGTGGGGTGTGCGTGTGTGGGTAAAAAAN

TGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGTAGAGAAGC
ACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATAAAAAA
TTCAGGTGACAGTACATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTTTGGAAATCAGTC
TGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAAT
ACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAAGGACA
CATGCTCCACTATGTTCATAGCAGCTTTATTTATAATAGCCAGAAGCTGG
AAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTA
CATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTA
ACACATTCCCAAAGGAACTCCACCATATGTACCCACTGATAAGTGGGTAT
TAGCCAAAACCTAAGATTACCCAGATATAAGAAACAATTTCCTAACCCCG
GAAACTGAAAAAAAATGGAAAATTGCAGTGGGTGAACTATGCCCCCCCCN

Query= MSMg01no340_b05.b1 MSMg01no340_b05.b1 CHROMAT_FILE:
MSMg01no340_b05.b1 PHD_FILE: MSMg01no340_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:02 2005
         (586 letters)



>mm_chr1_54215477_54216462
          Length = 986

 Score = 1118 bits (578), Expect = 0.0
 Identities = 581/582 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggacagcctgctctgtgtagctacttctaggccagttagagctatgtggtga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gaattccaggacagcctgctctgtgtagctacttctaggccagttagagctatgtggtga 803

                                                                       
Query: 65  gaccttgtcccttccccattctctactccaaaaagggtatgatcaagatacattgtatac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gaccttgtcccttccccattctctactccaaaaagggtatgatcaagatacattgtatac 743

                                                                       
Query: 125 atgtgtgaaattttcagagagttaaaagaccggctttcaaatgggactcttggtttgaaa 184
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 742 atgtgtgaaattttcagagagttaaaagactggctttcaaatgggactcttggtttgaaa 683

                                                                       
Query: 185 aagtgtactcatgtgattgcctggaaagaacatttttctttacaatttacacttggtata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aagtgtactcatgtgattgcctggaaagaacatttttctttacaatttacacttggtata 623

                                                                       
Query: 245 gggttttctacagggccctttagatccagaacccagcttaacagagaaatactgaaatgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gggttttctacagggccctttagatccagaacccagcttaacagagaaatactgaaatgt 563

                                                                       
Query: 305 gtggcacaaactccccattttttctacagttgaacatgaatatttgatgatagctgtaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gtggcacaaactccccattttttctacagttgaacatgaatatttgatgatagctgtaaa 503

                                                                       
Query: 365 atcttgaaatgggtcatctcatagatatttctgtgccttttgaactgttgattaaagtga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atcttgaaatgggtcatctcatagatatttctgtgccttttgaactgttgattaaagtga 443

                                                                       
Query: 425 aaatacagtttcttctcctaatgttttgaggaaggtgctacttggagaatatagaaactt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaatacagtttcttctcctaatgttttgaggaaggtgctacttggagaatatagaaactt 383

                                                                       
Query: 485 tttttctttttgtaaggaatattttaatttattcgttgacaatttcatacgtttatacaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tttttctttttgtaaggaatattttaatttattcgttgacaatttcatacgtttatacaa 323

                                                     
Query: 545 tgtgacttggacatagccatcccccaactcccatcttctata 586
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgtgacttggacatagccatcccccaactcccatcttctata 281


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)