BAC Information

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BAC

Clone NameMSMg01-340D16
Chromosome1 (Build37)
Map Location 65,723,601 - 65,837,964
singlet/doubletdoublet
Overlap genenone
Upstream geneCcnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340D16.T7 (MSMg01no340_d16.b1)MSMg01-340D16.TJ (MSMg01no340_d16.g1)
ACCAG454319AG454320
length718723
length of high quality
(start - end)		672 (47 - 718)645 (79 - 723)
definitionCHROMAT_FILE: MSMg01no340_d16.b1 PHD_FILE: MSMg01no340_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:13 2005CHROMAT_FILE: MSMg01no340_d16.g1 PHD_FILE: MSMg01no340_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,837,299 - 65,837,964)(65,723,601 - 65,724,244)
sequence
NNAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCG
CGGAATTCATAAGTCCTACCTACCTCAGTCAGCAGATCATGGATCTCTGA
AAATAATAATCTACATGTCTAGGAAGTTTAAATAGCTCGAAACTAGATAA
ATACAGAAGCATCTCATCTAAATGTACATGAAAATCTTTAAGTCAATTAA
ATAATGATAAATAATGAATTAAAAAATAGTAGTAACTCAAACGCTACAAT
CACAAAGGAACTAAAATAAGGCCAACAACTGGTTTCTCCATAGAACCAAC
AGAGGATGGTGGATTAACAATCCATTTGTTATTTTAAGTCTTTCAAAAAA
TAATCCCATAAAGTAATGTCAAAAAATTATATTTTAGCCCATAGTCATTA
GAAGTACAATTCACATGATTGGCACAATAGAATAACGTAGTTGTGAAGCT
ATACTAAGCAAGAAAATGGCTTGCAGATAATAGTGAGAATCTGCAGGATG
ATATAAAGAGATTTAAAACTAATCATTAAAATATTAACTAAAAGCTATGT
AACACATCTATTTTTTATTTTTTCATTTAACATAAAAGAAATTAAAACTA
CCTAAAGCAATAATTAGCATAAAATATTTAAGTGGGAGCAGAAAAATTTA
ATATGTAAACAAAAATCATGTAAAAATTCAGTGGGAGAGAATAGAATTGC
ACAAATTAAAGTTTCTAT

NNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGTGAAACTGGTTTCATTCT
TTTCCCAAGGACGTGATAGAAATGGATTTACTTGAGACTTCCTTGTTTCA
TATCTAACTTAGAATTTTTAACAGCTCCATCTAGGTAGAAAAATTTTCTC
ATAGTGCTTCTGTATTCATTCCTAATTATCAGATTGAATGTGAAGGGAAC
TGCATGATTATAGAATTCAGACTGTGTCTGACTTTGGGTGTGTTTACTGA
ATTAAAGTAAAATGGAGAAAGTGTTTTTCCATAGTTTTTATTATACAAAA
AGTTTTAAAATAAATGGAGATGCAAGATAAAATAATGGCTATATTTTCTT
GCCTTCAAAAATGGTATTATTACTTTTTTTTTCCTGGATCATTGTATCAA
TAAACTCAGCGACTTAAACCTCTGCTTCTACAGTCGCCTTTCATCTGTGC
ATTACTAGGAGCACATTTCAGACTATTTATTCTTGCTGAAGGTGGTTGCA
GTTTGGATGTGAAGTGTCAAGAAGTTCATGTATTCAGTCCTTCATCACTG
TTGCAAACATGGTTGACGGATTCGTAAAATTGATCAAGAACAATGGAGGG
GAGGAAAGGGTTTATGTCACCTTAACCTTCCACTTAACAGTTCATCACTG
AAGGAAATAAGGGCTGGAACTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_d16.b1 MSMg01no340_d16.b1 CHROMAT_FILE:
MSMg01no340_d16.b1 PHD_FILE: MSMg01no340_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:13 2005
         (672 letters)



>mm_chr1_65837093_65838164
          Length = 1072

 Score = 1280 bits (662), Expect = 0.0
 Identities = 665/666 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcataagtcctacctacctcagtcagcagatcatggatctctgaaaataataatct 66
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 gaattcataagtcctagctacctcagtcagcagatcatggatctctgaaaataataatct 813

                                                                       
Query: 67  acatgtctaggaagtttaaatagctcgaaactagataaatacagaagcatctcatctaaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 acatgtctaggaagtttaaatagctcgaaactagataaatacagaagcatctcatctaaa 753

                                                                       
Query: 127 tgtacatgaaaatctttaagtcaattaaataatgataaataatgaattaaaaaatagtag 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 tgtacatgaaaatctttaagtcaattaaataatgataaataatgaattaaaaaatagtag 693

                                                                       
Query: 187 taactcaaacgctacaatcacaaaggaactaaaataaggccaacaactggtttctccata 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 taactcaaacgctacaatcacaaaggaactaaaataaggccaacaactggtttctccata 633

                                                                       
Query: 247 gaaccaacagaggatggtggattaacaatccatttgttattttaagtctttcaaaaaata 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gaaccaacagaggatggtggattaacaatccatttgttattttaagtctttcaaaaaata 573

                                                                       
Query: 307 atcccataaagtaatgtcaaaaaattatattttagcccatagtcattagaagtacaattc 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 atcccataaagtaatgtcaaaaaattatattttagcccatagtcattagaagtacaattc 513

                                                                       
Query: 367 acatgattggcacaatagaataacgtagttgtgaagctatactaagcaagaaaatggctt 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 acatgattggcacaatagaataacgtagttgtgaagctatactaagcaagaaaatggctt 453

                                                                       
Query: 427 gcagataatagtgagaatctgcaggatgatataaagagatttaaaactaatcattaaaat 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gcagataatagtgagaatctgcaggatgatataaagagatttaaaactaatcattaaaat 393

                                                                       
Query: 487 attaactaaaagctatgtaacacatctattttttattttttcatttaacataaaagaaat 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 attaactaaaagctatgtaacacatctattttttattttttcatttaacataaaagaaat 333

                                                                       
Query: 547 taaaactacctaaagcaataattagcataaaatatttaagtgggagcagaaaaatttaat 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 taaaactacctaaagcaataattagcataaaatatttaagtgggagcagaaaaatttaat 273

                                                                       
Query: 607 atgtaaacaaaaatcatgtaaaaattcagtgggagagaatagaattgcacaaattaaagt 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 atgtaaacaaaaatcatgtaaaaattcagtgggagagaatagaattgcacaaattaaagt 213

                 
Query: 667 ttctat 672
           ||||||
Sbjct: 212 ttctat 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no340_d16.g1 MSMg01no340_d16.g1 CHROMAT_FILE:
MSMg01no340_d16.g1 PHD_FILE: MSMg01no340_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:13 2005
         (645 letters)



>mm_chr1_65723401_65724445
          Length = 1045

 Score = 1245 bits (644), Expect = 0.0
 Identities = 644/644 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagtgaaactggtttcattcttttcccaaggacgtgatagaaatggatttacttgagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagtgaaactggtttcattcttttcccaaggacgtgatagaaatggatttacttgagac 260

                                                                       
Query: 61  ttccttgtttcatatctaacttagaatttttaacagctccatctaggtagaaaaattttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccttgtttcatatctaacttagaatttttaacagctccatctaggtagaaaaattttc 320

                                                                       
Query: 121 tcatagtgcttctgtattcattcctaattatcagattgaatgtgaagggaactgcatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatagtgcttctgtattcattcctaattatcagattgaatgtgaagggaactgcatgat 380

                                                                       
Query: 181 tatagaattcagactgtgtctgactttgggtgtgtttactgaattaaagtaaaatggaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatagaattcagactgtgtctgactttgggtgtgtttactgaattaaagtaaaatggaga 440

                                                                       
Query: 241 aagtgtttttccatagtttttattatacaaaaagttttaaaataaatggagatgcaagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtgtttttccatagtttttattatacaaaaagttttaaaataaatggagatgcaagat 500

                                                                       
Query: 301 aaaataatggctatattttcttgccttcaaaaatggtattattactttttttttcctgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaataatggctatattttcttgccttcaaaaatggtattattactttttttttcctgga 560

                                                                       
Query: 361 tcattgtatcaataaactcagcgacttaaacctctgcttctacagtcgcctttcatctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcattgtatcaataaactcagcgacttaaacctctgcttctacagtcgcctttcatctgt 620

                                                                       
Query: 421 gcattactaggagcacatttcagactatttattcttgctgaaggtggttgcagtttggat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcattactaggagcacatttcagactatttattcttgctgaaggtggttgcagtttggat 680

                                                                       
Query: 481 gtgaagtgtcaagaagttcatgtattcagtccttcatcactgttgcaaacatggttgacg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgaagtgtcaagaagttcatgtattcagtccttcatcactgttgcaaacatggttgacg 740

                                                                       
Query: 541 gattcgtaaaattgatcaagaacaatggaggggaggaaagggtttatgtcaccttaacct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gattcgtaaaattgatcaagaacaatggaggggaggaaagggtttatgtcaccttaacct 800

                                                       
Query: 601 tccacttaacagttcatcactgaaggaaataagggctggaactt 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tccacttaacagttcatcactgaaggaaataagggctggaactt 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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