BAC Information

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BAC

Clone NameMSMg01-340G11
Chromosome1 (Build37)8 (Build37)
Map Location 87,739,382 - 87,739,96874,457,132 - 74,457,627
singlet/doubletsingletsinglet
Overlap geneCab39
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik
Downstream geneItm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340G11.T7 (MSMg01no340_g11.b1)MSMg01-340G11.TJ (MSMg01no340_g11.g1)
ACCAG454452AG454453
length716744
length of high quality
(start - end)		591 (48 - 638)496 (78 - 573)
definitionCHROMAT_FILE: MSMg01no340_g11.b1 PHD_FILE: MSMg01no340_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:25 2005CHROMAT_FILE: MSMg01no340_g11.g1 PHD_FILE: MSMg01no340_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:25 2005
singlet/doubletsingletsinglet
BLAST hituniqueplural
Map location.(87,739,382 - 87,739,968)(74,457,132 - 74,457,627)
sequence
NCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTGTTTATTACATGTAGCTCACTCATACTCAGAAGCCATGAAC
ACTAACACAGAATTGTCACTTTCCTTGTAAGAGCTCAGCTTCTTAATAAA
GAGCCCCTGAGACAAGGGTGGCTCTGGGTAAAGTTCGTATGTAAGGGTAA
TGAATACGGTAGGACAGGAGGAAGGCCTGGGGACTGACAGTAAGGTTTCA
CCCTGACTAAGGCATGAATAGTACCAAGGATTTATTTTCCAAAATCAGTA
CAGCTTCTGCAGAAGCTTTAGGTAATTTCTCAGATAATGTGTGTACATGT
CATGTATGAAGGAGGCAAACTGTAGTTAAGTGTCACCATGATGTCTCAAG
CTCACTGCATTTGTGGGGTAAGACTCACGATTAGGATGCATCGATGGAAG
GGAGTGCCCCATTCAGGAGCAGCAGCCCAGCATGAAGAGAGGTGTGGTAG
TGCCTTGTGTGAAAGAGGGCCCTTTGGCTGCACTTACTCAGATTGCCTGC
AAGTATGATTCAGCCACAAAATTGAAGTGGCATCACCGTGAACAGATTCT
GACATGCTAGTCTCCATCCATCCAGTTTCCGAGTGCCTGACTTGTTTCAA
GCACTATTCTAGGGTCTGGGGATTCAGCAGTGGCCTGTACATAGAAAGCC
TGTCCTTGTGGTACTT

NCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACACAGGAGAAAAACCTTATGTG
TGTAAGGAGTGTGGGAAAGCCTTTGCTCATTCCACTTCCCTTCACATACA
TGAAGGAACTCACAGTGGAGAGAAACCTTATGTATGCAAGCAATGTGGGA
AAGCCTTCACTTTGTCCAGTTCCCTTCGAAGGCATGATGTAGTTCATTCA
GAAGAGAAACCCTATATTTGTAAGTGTTGTGGGAAAACCTTTGGTTGTTA
CAGTAGCGTTCAGAAACATGAAAAGACTCATAGAGAAAACAGACTCTGTT
AGTGTAATAAATATGGGGAAACTTAGTTGCTCTGATTCTTTTCAAATACA
TGACATAGCTGACACTGGAAAGAAACCCAAGGTTTGTATCCATTATGGGA
TGCTTTCATTGACCTTAGTTCTTTTTAATACCATGGAAGGATTCACACTG
GAGAAAAACTTCTGGATATAATACAGAAAAATGTTCATTTATTCCGCTTC
TTTAACAAACATGGAAAAACTTACACTGGAGAGAAATCCTAAATATAAAA
TGTGGAAACACTTCATTATCACTTGACCGTCTAAAATTCATGAAAATGTG
TAATCCATANCATGAGAAAATGTTTCCGAACCTTTTGCAATGCAAGATAA
CAGAAGGAAGCCCGCGGTGGTGGTGGACGCCCTTAATCCCACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_g11.b1 MSMg01no340_g11.b1 CHROMAT_FILE:
MSMg01no340_g11.b1 PHD_FILE: MSMg01no340_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:25 2005
         (591 letters)



>mm_chr1_87739178_87740168
          Length = 991

 Score = 1081 bits (559), Expect = 0.0
 Identities = 580/587 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgtttattacatgtagctcactcatactcagaagccatgaacactaacacaga 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgtttagtacatgtagctcactcatactcagaagccatgaacactaacacaga 264

                                                                       
Query: 65  attgtcactttccttgtaagagctcagcttcttaataaagagcccctgagacaagggtgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attgtcactttccttgtaagagctcagcttcttaataaagagcccctgagacaagggtgg 324

                                                                       
Query: 125 ctctgggtaaagttcgtatgtaagggtaatgaatacggtaggacaggaggaaggcctggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctgggtaaagttcgtatgtaagggtaatgaatacggtaggacaggaggaaggcctggg 384

                                                                       
Query: 185 gactgacagtaaggtttcaccctgactaaggcatgaatagtaccaaggatttattttcca 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 gactgacagtaaggtttcaccctgactaaggcattaatagtaccaaggatttattttcca 444

                                                                       
Query: 245 aaatcagtacagcttctgcagaagctttaggtaatttctcagataatgtgtgtacatgtc 304
           |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 aaattagtacagcttctgcagaagctttaagtaatttctcagataatgtgtgtacatgtc 504

                                                                       
Query: 305 atgtatgaaggaggcaaactgtagttaagtgtcaccatgatgtctcaagctcactgcatt 364
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 505 atgtatgaaggaagcaaactgtagttaagtgtcaccatgatgtctcaagctcaccgcatt 564

                                                                       
Query: 365 tgtggggtaagactcacgattaggatgcatcgatggaagggagtgccccattcaggagca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtggggtaagactcacgattaggatgcatcgatggaagggagtgccccattcaggagca 624

                                                                       
Query: 425 gcagcccagcatgaagagaggtgtggtagtgccttgtgtgaaagagggccctttggctgc 484
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 625 gcagcccagcatgaagagaggtgtggtattgccttgtgtgaaagagggccctttggctgc 684

                                                                       
Query: 485 acttactcagattgcctgcaagtatgattcagccacaaaattgaagtggcatcaccgtga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acttactcagattgcctgcaagtatgattcagccacaaaattgaagtggcatcaccgtga 744

                                                          
Query: 545 acagattctgacatgctagtctccatccatccagtttccgagtgcct 591
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acagattctgacatgctagtctccatccatccagtttccgagtgcct 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no340_g11.g1 MSMg01no340_g11.g1 CHROMAT_FILE:
MSMg01no340_g11.g1 PHD_FILE: MSMg01no340_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:25 2005
         (496 letters)



>mm_chr8_74456932_74457827
          Length = 896

 Score =  944 bits (488), Expect = 0.0
 Identities = 494/496 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacaggagaaaaaccttatgtgtgtaaggagtgtgggaaagcctttgctcattccactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 acacaggagaaaaaccttatgtgtgtaaggagtgtgggaaagcctttgctcgttccactt 260

                                                                       
Query: 61  cccttcacatacatgaaggaactcacagtggagagaaaccttatgtatgcaagcaatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccttcacatacatgaaggaactcacagtggagagaaaccttatgtatgcaagcaatgtg 320

                                                                       
Query: 121 ggaaagccttcactttgtccagttcccttcgaaggcatgatgtagttcattcagaagaga 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaagccttcactttgtccagttctcttcgaaggcatgatgtagttcattcagaagaga 380

                                                                       
Query: 181 aaccctatatttgtaagtgttgtgggaaaacctttggttgttacagtagcgttcagaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaccctatatttgtaagtgttgtgggaaaacctttggttgttacagtagcgttcagaaac 440

                                                                       
Query: 241 atgaaaagactcatagagaaaacagactctgttagtgtaataaatatggggaaacttagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgaaaagactcatagagaaaacagactctgttagtgtaataaatatggggaaacttagt 500

                                                                       
Query: 301 tgctctgattcttttcaaatacatgacatagctgacactggaaagaaacccaaggtttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctctgattcttttcaaatacatgacatagctgacactggaaagaaacccaaggtttgt 560

                                                                       
Query: 361 atccattatgggatgctttcattgaccttagttctttttaataccatggaaggattcaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atccattatgggatgctttcattgaccttagttctttttaataccatggaaggattcaca 620

                                                                       
Query: 421 ctggagaaaaacttctggatataatacagaaaaatgttcatttattccgcttctttaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctggagaaaaacttctggatataatacagaaaaatgttcatttattccgcttctttaaca 680

                           
Query: 481 aacatggaaaaactta 496
           ||||||||||||||||
Sbjct: 681 aacatggaaaaactta 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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