BAC Information

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BAC

Clone NameMSMg01-340I07
Chromosome1 (Build37)
Map Location 147,654,826 - 147,655,236
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667877, LOC625057, LOC383570
Downstream geneLOC383571, B830045N13Rik, LOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340I07.T7 (MSMg01no340_i07.b1)MSMg01-340I07.TJ (MSMg01no340_i07.g1)
ACCAG454537AG454538
length738761
length of high quality
(start - end)		561 (37 - 597)361 (77 - 437)
definitionCHROMAT_FILE: MSMg01no340_i07.b1 PHD_FILE: MSMg01no340_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:33 2005CHROMAT_FILE: MSMg01no340_i07.g1 PHD_FILE: MSMg01no340_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAGGATCCGCG
GAATTCAGTAAGATTATACAAGCTAAGTCATTCCCTTACACAGGAATTTA
CCTTCACTAAGGAAGAAGGAAGTTTCAGACCAAAGGAGAAACCAGAATAG
AACTATAGCAGAGTTACACCTATGCACACATAGTGGGGTGGAGTGAGATG
AGGTCAGTCAGCTGGAGTATAGGAGGGTTGTTGTTATTGTCCTTGCCTAA
GTGGAGAGGTTGTTGTAAGAAAAGCTGCAAGAAGGAGTAAAAGAAGAAGC
TGTTAAGTGAACGTGACTTGGTGTCCCTGTTGTTCTTGCCTCTGTGGGTC
AGAGACTGCAGCTTGTCATCTTGACAGCTAATCTGGACTGGATGGAGGAG
AATTGGATCAATAGAAAGGTGGAGTTCCACAGGGCAGGTTATCCCTGTGT
CAGATGGGCTCCGTGTTTTTGTTTACTGTGGACCTCCTGGGAGGCACTCT
GGCTATAGGTTTGGGAAGGTACCTGGCTGCTGATTAGGTCCAGGTAGGAG
ACAGGCTGGAAGAAAGGTGGAGCTGCAGCATGGGGGTGTGGAGGTGTGGG
GAGATGNNTNCNANGNCNNNTGGNNCCCNNTCCCNNNTAGNNGGTTTTTT
TGGTGANATTCTCCCCTGTGTCTTTGNTTGCTGCCGACCTTTTTGGTTAT
GCCGCTTGCTGTTTGCGTGGTACTATTTTCTAACTTTN

NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGTCTGAAATGAGGCTAGGGT
ATTTGGCAGGAGGAAGGGAGAGAGTGTAAAGATCTGCAGTTAGATTACCT
GCTTTACTGGCTGGAGAGGACTGAGGAATCCCAGCTAATGCCTGTTGGAG
CTGGGGACCACAATAAAGCAATAAATGGGGGGGGGATGGACATTTGGAGT
GTAAAATTTGTTTGATCTACTGGGAAGGCACACAGGCTGGAAGGAACCTG
GAGCAGGCAGTCTGCTATAGAACTGGAGATAAGATAGGTTCTTGGTTTAT
AGGTAGCTAGTGGGAAAGGTGAAAATCTATAGTTACATTACCTGCTTCTC
AGGCTAGAGTTGTTTGAGGGTTCCCAGGAAATACCTGGCTGGGGGTTCTG
GGACTGGTCCCAAAGCCATGAGGTTATTTTTGAAAAAAGCTATTTTTAGG
AAGGGAAGATCCTGGGAGAAAAAAACTTTGGGAAAAAGGGGCCTCTTGGN
GGNCNNNNNNNNTTTNNNNNNGTTTNNNACTCTNNNCTTTGCCTCTTCAC
GCTTTCCCTCTACCTCTTCTTTTTTTCTTTTTTTCTTTTACTCTTCCTTC
TTTATCTTCTTTTTTTTTTCTCATTCCTTTTATACCTACTTTCCCCCCCC
TCCCCTTTGTTTTCCATCTCTCCTACCTTTTATTGCGCATAAACGTTACC
CATCGCTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_i07.b1 MSMg01no340_i07.b1 CHROMAT_FILE:
MSMg01no340_i07.b1 PHD_FILE: MSMg01no340_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:33 2005
         (561 letters)



>mm_chr1_147654476_147655436
          Length = 961

 Score =  756 bits (391), Expect = 0.0
 Identities = 406/411 (98%)
 Strand = Plus / Plus

                                                                       
Query: 151 ggtggagtgagatgaggtcagtcagctggagtataggagggttgttgttattgtccttgc 210
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ggtggagcgagatgaggtcagtcagctggagtataggagggttgttgttattgtccttgc 410

                                                                       
Query: 211 ctaagtggagaggttgttgtaagaaaagctgcaagaaggagtaaaagaagaagctgttaa 270
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ctaagtggagaggttgttgtaagaaaagctgcaagaaggagtaaaagaagaagctgttaa 470

                                                                       
Query: 271 gtgaacgtgacttggtgtccctgttgttcttgcctctgtgggtcagagactgcagcttgt 330
           |||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||
Sbjct: 471 gtgaacgtgacttggtgtccctgttgttcttgtctctgtgggtcagagactatagcttgt 530

                                                                       
Query: 331 catcttgacagctaatctggactggatggaggagaattggatcaatagaaaggtggagtt 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 catcttgacagctaatctggactggatggaggagaattggatcaatagaaaggtggagtt 590

                                                                       
Query: 391 ccacagggcaggttatccctgtgtcagatgggctccgtgtttttgtttactgtggacctc 450
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ccacagggcaggttatccctgtgtcagatgggctccgtgtttttgtttactgtggacctc 650

                                                                       
Query: 451 ctgggaggcactctggctataggtttgggaaggtacctggctgctgattaggtccaggta 510
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 651 ctgggaggcactctggctataggtttgggcaggtacctggctgctgattaggtccaggta 710

                                                              
Query: 511 ggagacaggctggaagaaaggtggagctgcagcatgggggtgtggaggtgt 561
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ggagacaggctggaagaaaggtggagctgcagcatgggggtgtggaggtgt 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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