BAC Information

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BAC

Clone NameMSMg01-341A05
Chromosome1 (Build37)
Map Location 11,737,998 - 11,738,526
singlet/doubletsinglet
Overlap geneA830018L16Rik
Upstream geneLOC433271, C030045D06Rik
Downstream geneLOC665262, LOC100039709, LOC621353, LOC100039733, Sulf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341A05.T7 (MSMg01no341_a05.b1)MSMg01-341A05.TJ (MSMg01no341_a05.g1)
ACCAG454914AG454915
length739722
length of high quality
(start - end)
533 (43 - 575)491 (78 - 568)
definitionCHROMAT_FILE: MSMg01no341_a05.b1 PHD_FILE: MSMg01no341_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:08 2005CHROMAT_FILE: MSMg01no341_a05.g1 PHD_FILE: MSMg01no341_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAACAGGATTTCATTCTCTCTGTCACTGTTTGTGTTGTTGCAGAAAATC
TGGATGACTTAAGGATGGAGGGTGTAACCACTCTGGTACTTTCGGGGAGC
AAATTTAACCAAGGTCGTCCTACTCACCCTGCCGAGCCACAGGCCAAAGT
CACACTGAACATCTGTTCAAGGTGTGCCAGGTAAAACTTATTCTTGTTGT
GTGTATAGCTAAGATTTTGATGCAAAGAGGGTACTGTGGGAAGAAGATAG
TTTTCCTAATTACTTTTGTTCTGACATTGGCCGTTTATCTTTGTGGGCAA
GGCAACTTTGACCAACAAAGAATCAAAAAGTTTAGATTGTCTACTCAGCT
TGAGATTGTGTTGTGTCCTTTAGCCTCTGTGGTTTCTTCCCTGCCTGCTC
TTCATTTCTTTTTTCAGAGAAGGTTCAGCAAGCTCTGAACATTCAGAGCC
ACCTTTAAAACACTTTTCTAAAAGGAGTTTTGCTCAGGTATAGTTCAAAT
TCTGGTATGATTGGCTTTTTAGCCTGGCCTCATCCCGTTCACCTCCTGGN
AAGAATTTAATCAGCTTGAGGCTTCTCAGTTTTGGCAGCTGGAAACAATC
TTTGCCAACACTGCATGGGGGCCAAAAAACAATTTGGGTTCTGCTCAGCC
CTTCTGGGGTATAGCAACTCCCCAATTATTTCCCATTCT
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAGTAGAAAAACAAAAACAAA
AACAAAACCAACAACAACAAAAAACACAATACTGCGTGGAATTCCATGAT
GATGGATAAAGGCATTCTGGAAATCCATGGTGGTGGTTTTAGAAGGCACA
TTATGTGCAGGAAAGGCAAATTAATAACCAGAATAAGCATGTCCTACAAT
AAGGACAAAGTACGGTCGTTTTTTATGGAGTAAGTGGTCCAATGTAGTTA
ATCTGTCACAAGGTCACTGTCTGGTCACCCTAGGGAAAGGTGCTGAATCT
GGGGCTCATTGTTGGTCTCTAGTAGTGGCAGATATGGCATTCAGCAGCAG
CTATAGCCAGGTCAGCCTTTATGAGTGTAAGTCCGTGTTGTCAACTCCTT
CTCTGGCACCATGGTCACTTTGTTCATGAACCCACTGGGCAATGAGAGGT
GTAGTTTGGAAGAGAGGTGGCTGACTGTCCAAAGAATGAGCCATCCTATC
CACCTAATTATTGAAGTCCTCCCTCTGCGAAGTTACCTTTTGGTGAACAT
TTATGTGGCGCACAAGAATTCATCCCCTAATTTGGAAAGACACATTACTT
TTATTTCCCCATTGGACAGAATATTCCCCTACTTTTTCCCACAAAACTTT
CCTCATCGGTTTCCAGAAAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_a05.b1 MSMg01no341_a05.b1 CHROMAT_FILE:
MSMg01no341_a05.b1 PHD_FILE: MSMg01no341_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:08 2005
         (533 letters)



>mm_chr1_11737794_11738726
          Length = 933

 Score =  977 bits (505), Expect = 0.0
 Identities = 523/529 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacaggatttcattctctctgtcactgtttgtgttgttgcagaaaatctggatg 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacaggagttaattctctctgtcactgtttgtgttgttgcagaaaatctggatg 264

                                                                       
Query: 65  acttaaggatggagggtgtaaccactctggtactttcggggagcaaatttaaccaaggtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acttaaggatggagggtgtaaccactctggtactttcggggagcaaatttaaccaaggtc 324

                                                                       
Query: 125 gtcctactcaccctgccgagccacaggccaaagtcacactgaacatctgttcaaggtgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcctactcaccctgccgagccacaggccaaagtcacactgaacatctgttcaaggtgtg 384

                                                                       
Query: 185 ccaggtaaaacttattcttgttgtgtgtatagctaagattttgatgcaaagagggtactg 244
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccaggtaaaacttatacttgttgtgtgtatagctaagattttgatgcaaagagggtactg 444

                                                                       
Query: 245 tgggaagaagatagttttcctaattacttttgttctgacattggccgtttatctttgtgg 304
           ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggaaagaagatggttttcctaattacttttgttctgacattggccgtttatctttgtgg 504

                                                                       
Query: 305 gcaaggcaactttgaccaacaaagaatcaaaaagtttagattgtctactcagcttgagat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcaaggcaactttgaccaacaaagaatcaaaaagtttagattgtctactcagcttgagat 564

                                                                       
Query: 365 tgtgttgtgtcctttagcctctgtggtttcttccctgcctgctcttcatttcttttttca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtgttgtgtcctttagcctctgtggtttcttccctgcctgctcttcatttcttttttca 624

                                                                       
Query: 425 gagaaggttcagcaagctctgaacattcagagccacctttaaaacacttttctaaaagga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 625 gagaaggttcagcaagctctgaacattcagagccacctttaaaacacttttctaaaaaga 684

                                                            
Query: 485 gttttgctcaggtatagttcaaattctggtatgattggctttttagcct 533
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gttttgctcaggtatagttcaaattctggtatgattggctttttagcct 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)