BAC Information

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BAC

Clone NameMSMg01-341A16
Chromosome1 (Build37)
Map Location 23,696,433 - 23,696,946
singlet/doubletsinglet
Overlap genenone
Upstream geneRims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782
Downstream geneB3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341A16.T7 (MSMg01no341_a16.b1)MSMg01-341A16.TJ (MSMg01no341_a16.g1)
ACCAG454936AG454937
length735738
length of high quality
(start - end)		518 (44 - 561)542 (76 - 617)
definitionCHROMAT_FILE: MSMg01no341_a16.b1 PHD_FILE: MSMg01no341_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:11 2005CHROMAT_FILE: MSMg01no341_a16.g1 PHD_FILE: MSMg01no341_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCCCTGCCTTTTGTATTTAAATCACACAAAGGTCATATGCTAAATA
CTTTTACCAAACCTGTACACTTGCCCGAACTCACCTACAAGGACATACTC
CACACAGCCTGTCAAACAGAGAGAAACCCGACTCGCCACTGTGAGCATCT
AGTGGCTTTCAGTAATAGAGGCAACTTCATTTTGTAGGCTACTGAAGACA
AACACGCTTTGAAAAGCTCTCAGTGGACACATCGCAATGATTGAAACACA
TTCCTCCATCACTCGCTCTCTAGCACCCCACAAAACAAATGATGCAGAGA
AACCCAGACGTTTTGACAAGCCTCCCTTTGACAATGGGAGCCAACAGCAC
TCCCAAATCCCCTCTGTTTTTCCACAGCATACTAATCTCAGAATTTATCA
GTTTGAATAGATTCCCCGAAGAGTAACTCTTGACTTAAGCATTCGGCGCT
CAATTCTTCAGGGGAAATTTCCATAGCCTGCATTAATAATCATAAGAATC
CAGAAACAGTGTTACTCGGAGCACGCACAAGGCCGTCTTGTTCTCTCACA
CAGAGACAAGTTGTTAATGAACTGATAAAGTACGGCTTGGTAAAAACTCA
CAATTTACAGCACAATCCCTTGGCCTTGAGACATGTTTCCAAATTGAAGA
ACTCTAAAAATGCGACCCATAAACCCTTTATGGCG

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATGCCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGACTTGTACAACCACTCTGGAAA
TCAGACTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATACCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGANATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGAAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTTC
CTAACACATGAAACTCATGAAAAATGAAGACTGAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_a16.b1 MSMg01no341_a16.b1 CHROMAT_FILE:
MSMg01no341_a16.b1 PHD_FILE: MSMg01no341_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:11 2005
         (518 letters)



>mm_chr1_23696229_23697146
          Length = 918

 Score =  963 bits (498), Expect = 0.0
 Identities = 510/514 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcccctgccttttgtatttaaatcacacaaaggtcatatgctaaatacttttac 64
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gaattctctcctgccttttgtatttaaatcacacaaaggtcatatgctaaatacttttac 659

                                                                       
Query: 65  caaacctgtacacttgcccgaactcacctacaaggacatactccacacagcctgtcaaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 658 caaacctgtacacttgcccgaactcacctacaaggacatactccacacagcctatcaaac 599

                                                                       
Query: 125 agagagaaacccgactcgccactgtgagcatctagtggctttcagtaatagaggcaactt 184
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 598 agagagaaacccgactcgccactgtgagcatctactggctttcagtaatagaggcaactt 539

                                                                       
Query: 185 cattttgtaggctactgaagacaaacacgctttgaaaagctctcagtggacacatcgcaa 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 538 cattttgtaggctactgaagacaaacacgctttgaaaagctctcagtggacacatcacaa 479

                                                                       
Query: 245 tgattgaaacacattcctccatcactcgctctctagcaccccacaaaacaaatgatgcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tgattgaaacacattcctccatcactcgctctctagcaccccacaaaacaaatgatgcag 419

                                                                       
Query: 305 agaaacccagacgttttgacaagcctccctttgacaatgggagccaacagcactcccaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 agaaacccagacgttttgacaagcctccctttgacaatgggagccaacagcactcccaaa 359

                                                                       
Query: 365 tcccctctgtttttccacagcatactaatctcagaatttatcagtttgaatagattcccc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tcccctctgtttttccacagcatactaatctcagaatttatcagtttgaatagattcccc 299

                                                                       
Query: 425 gaagagtaactcttgacttaagcattcggcgctcaattcttcaggggaaatttccatagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gaagagtaactcttgacttaagcattcggcgctcaattcttcaggggaaatttccatagc 239

                                             
Query: 485 ctgcattaataatcataagaatccagaaacagtg 518
           ||||||||||||||||||||||||||||||||||
Sbjct: 238 ctgcattaataatcataagaatccagaaacagtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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