BAC Information

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BAC

Clone NameMSMg01-341B12
Chromosome1 (Build37)
Map Location 107,802,531 - 107,802,743
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh20, Rnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a
Downstream geneEG635504, Zcchc2, EG435634, Phlpp, LOC626075, Bcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341B12.T7 (MSMg01no341_b12.b1)MSMg01-341B12.TJ (MSMg01no341_b12.g1)
ACCAG454975AG454976
length829748
length of high quality
(start - end)
213 (65 - 277)351 (72 - 422)
definitionCHROMAT_FILE: MSMg01no341_b12.b1 PHD_FILE: MSMg01no341_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:15 2005CHROMAT_FILE: MSMg01no341_b12.g1 PHD_FILE: MSMg01no341_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATCACTTGCCGAAGAAGGGAGGAAGCTCTTCGAATAATTACAAGTTCAG
ATAATTAGAAAAGCACACAGGACAGGGCATTGGTTCAAGATGAAAACTGG
CAAAGAGATACACTAATTTGCCAGGGTCCATGTTTAAATATTAATGAACA
AAGCATTAGTTACATGATGGATACTTCCCATATGCAAAGGCCTGTGCTTG
GTAGATAAGGTGTGTGAGTGTTTGGGGGTGAGATTTTTTTCTCTCTTTTC
CCCCTTTTTTTTTTTTTTCCCTTTCCCTTTCCTTCCTCCTACTTTCTACT
TTTTCCCCTACCCTCCCTTTAACCCCCCCCTTCCCTCCCCCTCCCTTTTC
CCTTTTCCCCGCCCCATGTCTCTATCACTCTCTCTCTCCCTAATCCCTAC
TTTCGCCCTTTCCTCTTCTTCCTTCTTTTATCTCCCCTTTCTCCTTTCCC
TTCCTTCCCTTTTTTCTCATCTCCCTCTTCCTTTATCCTTTCTTCCCCCC
CCCCCGTTTTTCTCGCGCCCTTTTTCTTTTTTTTCCCCCCCTTCCCCCAC
CCTCTTCCTTTCCTTTTCTACTCCTTCTACTTCCCCTTCTCCTCTTTCCC
CATTTCCCCCCCCCTTTTCCCCCCCCCTTTTTTCATCTTTTTCTCTTTTT
TCCCCCCTTTTTCTCCTCTTTTTTTTTACCCTACACCTCTCCCTCTTTCT
TTTTTTCTTCCCCTATTATTTATACCCCATTTATTTTTTCTTGTTACCTC
CATCTTATTTTACCCCTTTTTCTTCCATC
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTCTTAACT
CAGAGATCGCATTGCCTCTGCCTCCCCAAGTACTGAGATTAAAGGTATGT
GTCACCACTGCCTGACTTTTAAATTTATTGATTCTACAGATTGATCTGGA
AAGGATTTCAATCCTAATCATATAAGTTTCTAATCTGAGTTTAGGATGAC
TTTCCATACATCAAAGTCTTTTATAATATCCTACAACAGTGGTTTGTAGT
TTTCAGAATGTACGTTTTGTACTTCATTCTTTAAGTACTTTAGTTGTAAA
CTGAAAGAGACTCTTTTTCCTTTGTTAAGTGCAGAAATACAATTGATTTT
GAGTGTGTACTTAAATGAGACACAGCACACTAGGCTGGGACGGAATGAGA
TGGAACTTTATACAGCACACTAATGTTAAGACTTTCTCTGCTGTTAGAGC
AGTTGCGAGTGGATCAAATTCATCTCCTAGATGTTAATGCATGTATCTTT
GCTATAGTTCTTTGGAAATCCTTGTAATTATGGTACATTATTTTATTTAC
CCTCCTATCTTTACCTCGCCGTTCATTATATTTCTATCCCCTTTTTTTTT
TCATTTTTCCCCCTCTCCCCCCTTATTTGACTTTCATCATCTTCTTTATC
TGCTCCTTTTAACACCTACCTTTCTCTTCTCCCTCATTTTCATTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_b12.b1 MSMg01no341_b12.b1 CHROMAT_FILE:
MSMg01no341_b12.b1 PHD_FILE: MSMg01no341_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:15 2005
         (213 letters)



>mm_chr1_107802331_107802943
          Length = 613

 Score =  397 bits (205), Expect = e-115
 Identities = 211/213 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagggaggaagctcttcgaataattacaagttcagataattagaaaagcacacaggaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gaagggaggaagctcttcgaataattacaagttcagataattagaaaagcacacaggaca 354

                                                                       
Query: 61  gggcattggttcaagatgaaaactggcaaagagatacactaatttgccagggtccatgtt 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 353 gggcattggttcaagatgaaaactggcaaagatatacactaatttgccagggtccatgtt 294

                                                                       
Query: 121 taaatattaatgaacaaagcattagttacatgatggatacttcccatatgcaaaggcctg 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 293 taaatattaatgaacaaagcattagttacatgatggatacttcccatacgcaaaggcctg 234

                                            
Query: 181 tgcttggtagataaggtgtgtgagtgtttgggg 213
           |||||||||||||||||||||||||||||||||
Sbjct: 233 tgcttggtagataaggtgtgtgagtgtttgggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)