BAC Information

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BAC

Clone NameMSMg01-341D21
Chromosome1 (Build37)
Map Location 96,782,032 - 96,782,481
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
Downstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341D21.T7 (MSMg01no341_d21.b1)MSMg01-341D21.TJ (MSMg01no341_d21.g1)
ACCAG455086AG455087
length790743
length of high quality
(start - end)		454 (41 - 494)376 (78 - 453)
definitionCHROMAT_FILE: MSMg01no341_d21.b1 PHD_FILE: MSMg01no341_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:26 2005CHROMAT_FILE: MSMg01no341_d21.g1 PHD_FILE: MSMg01no341_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTATTGAAAGATATTACATTTCATTAATTAATTAATGACCAAGAATTAA
ATAGTTTCCCATAACTTTGTCAATACTTTTAAAACTTTCATAATGGGTGC
CCAGCCAGTAAACTTTGGATGTAATTATAATTAATCTTAGCATCAGATAA
AATATTTTAATGTCTCTATAGAGCTAATATTCAATTTCTCATCAGTATTC
ATGACAGAGAATATAACTATTAGTTATTCAGAGAACATTTTCTGATGCAG
TCACCATATATTTATTCTTTCCTTCTTCTGTCTTAGCAATATCACATATG
CCTTTAAAAGGTTTTAGCTGCATATATATCAAAAGATGGCCTAGTCGGCC
ATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGT
ACAGGGGAACACCAGGGCCAAAAAGGGGGAGTGGGTGGGCAGGGGAGTGG
GGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNTNNNNCN
NTTTNNNNNNTTTCCCTTTTCCCCTTCGTCTCTTTCTTTTTTCCCTTTCT
TCCTCTCTTTTTTTTTTTTCCCCCTTTTTCCTCCTTTTCTTCCCCTTCTT
TTTCTTTTTTTCCCCCCTTCCTTTTCCTCGTTCCCTTCTTCTTTTCGCGT
TTTCCCCCTCTCCCTTTTTTCTTTTTTCCCCCCCCTTTTTCCCTCCTTGT
TTTTTCTCCCTTTTTCTCCCCCCGCCTTGTTTTCCTTTTT

NCCGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTTTGTACCCCATT
TTAATAGGGTTATTCTGTTCTCTGGAGTCTAACTTCTTAAGTTTTTTATA
TATTTTGGATATTAGCCCTTTATTGAATATAGGGTTGGTAAAGATAGACT
GAAGGAGCTGAAGGGGATAGCAACCCCATAGTAAGAACAACAATGTTAAC
CAACTAGACCTCCCCAAAACTTCCAGGGACTAAAACCCAATCAAAGAGTA
CACATGGAGGGATCCATGGCTCCAGCTACATATGTAGCAGAAGATGGCCT
TATCTGGCATCAATGGGAGGGGAGCCCCTTGGTCCTATGGAGACTTGATG
ACCTAACCTAGTGGAATTCTAGGGCACTGAGGCAAGAGTGTGTTTGAGGC
AAATGGAGGTGTGGCCGTTAGGGNTCNNCCTCTTTTCCCTTTCCCTTCCT
CTTTTCCTTTCCCTTTTTTCCCTCCCTTTCTTTCCTCCCCCCCTTCTCTT
CCTTTTTTTCCCCTTCTCTCCTTTCTCCCTTTTTTTCTTTTTCTTTTCCC
CTTTTTTTCCCCCCCTTCCCTCCTTTTTTTTTTCCTCTCCCCTTCTTTTT
TTTTTCTCTTTCCCCGTCCCTTTTTTTTTCTCCCCCCTTCCTTTTTTTTC
CTTTTTCCTCTCTTCTCCCCCTTTTCTTTCCTTTTCCTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_d21.b1 MSMg01no341_d21.b1 CHROMAT_FILE:
MSMg01no341_d21.b1 PHD_FILE: MSMg01no341_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:26 2005
         (454 letters)



>mm_chr1_96781828_96782681
          Length = 854

 Score =  862 bits (446), Expect = 0.0
 Identities = 449/450 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattattgaaagatattacatttcattaattaattaatgaccaagaattaaatag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattattgaaagatattacatttcattaattaattaatgaccaagaattaaatag 264

                                                                       
Query: 65  tttcccataactttgtcaatacttttaaaactttcataatgggtgcccagccagtaaact 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 tttcccataactttgtcaatacttttaaatctttcataatgggtgcccagccagtaaact 324

                                                                       
Query: 125 ttggatgtaattataattaatcttagcatcagataaaatattttaatgtctctatagagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttggatgtaattataattaatcttagcatcagataaaatattttaatgtctctatagagc 384

                                                                       
Query: 185 taatattcaatttctcatcagtattcatgacagagaatataactattagttattcagaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taatattcaatttctcatcagtattcatgacagagaatataactattagttattcagaga 444

                                                                       
Query: 245 acattttctgatgcagtcaccatatatttattctttccttcttctgtcttagcaatatca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acattttctgatgcagtcaccatatatttattctttccttcttctgtcttagcaatatca 504

                                                                       
Query: 305 catatgcctttaaaaggttttagctgcatatatatcaaaagatggcctagtcggccatca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catatgcctttaaaaggttttagctgcatatatatcaaaagatggcctagtcggccatca 564

                                                                       
Query: 365 ctggaaagagaggcccattggacttgcaaactttatatgccccagtacaggggaacacca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctggaaagagaggcccattggacttgcaaactttatatgccccagtacaggggaacacca 624

                                         
Query: 425 gggccaaaaagggggagtgggtgggcaggg 454
           ||||||||||||||||||||||||||||||
Sbjct: 625 gggccaaaaagggggagtgggtgggcaggg 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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