BAC Information

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BAC

Clone NameMSMg01-341G06
Chromosome1 (Build37)
Map Location 40,948,439 - 40,948,801
singlet/doubletsinglet
Overlap genePpia-ps1_352.1
Upstream geneMap4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182
Downstream geneLOC100041441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341G06.T7 (MSMg01no341_g06.b1)MSMg01-341G06.TJ (MSMg01no341_g06.g1)
ACCAG455198AG455199
length849767
length of high quality
(start - end)
223 (44 - 266)376 (75 - 450)
definitionCHROMAT_FILE: MSMg01no341_g06.b1 PHD_FILE: MSMg01no341_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:38 2005CHROMAT_FILE: MSMg01no341_g06.g1 PHD_FILE: MSMg01no341_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCATATCGTCTCCCTGAACTGTAGAGTGAGGGCTATTATGGTTGGAA
AGGCCAAATGGAAGCCTTTAGAGTTGCCTCTGCCAAAGAAAATAGTGAAT
CAAAAACAGTATCGTATTCCTGGAGGCATTGCAGAAATTACTGCCACTAT
CAAGGATTTGAAAGATGCAGGGGTGGTGGTTCCCACCACATCTCCGTTTA
ATTCTCCTATCTGGCCTGTGCTCGAAAACAGATGGATCATGGAGAATGAT
AGTTGAATACCGAAAATTTTTTTTTTTTGGCAACTCCAATTGCCCCTGCT
GTACCATATGTATTTTTTTTACCTGAGCCCATTATCTTTTCTCCCTGCCA
CCTGTTATGTCTCTTACTGACTATGCCCAATTTCTTTCCCCCTTTTCCCT
TTCCCATTTTCGCCCATCCCATTATTTTTCCGTTTTCCCTCTTACTTCCT
TCCTACTCATTTCCCTTTCCCCATCTCCCCCCCCCTTCTTCTCTTCCTAT
CTCTCTTTTCCCCCTCGTTTCCTTTCCTTTTCTTTTTCCTCCCCCCCTTT
TTCCCCTTCTTTATCCCCGGCCCATCCCTTTTTACTTATCCATCCCTCCC
CTTCCCTTCTTTCCCCACTCTTTTTTTTTCCCTCCAACCTACCATATCCC
CTTCCTTTACCATTCCTTTCCTCTCCATTCCCTCCTTCCTTCCCCTCCCC
CTCTCCTTTTCTTTCCCTTTAACCCCTTTATTCCGCCTCTATCTCTCCTC
CTTTTCCTTAACCATTACCATTCTCTTTTTTCTCCCTCTTTTCCCTCCT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCCTTTGGAATTTAGGGAT
ACATGTCTCGAAGTATTAAAATACACACACACACACACACACACACACAC
ACACACACACACACACACACAGAGGAGGCCAGGAGAGGGATGACTCCATG
GAGGAGATCCTGTGGTACAGCTGGGATGGTCAGAGGTTCAATCCCCAACA
TAAAAAAATCAAAACACAGTTTTGAGGTGTTAATGGTTCTCAGAGTTATA
AAACTAGACCCACCTAGAACTTGATAAGATCTAGATTGTTAGGTCCCATC
CCCAGATAGGAACATATGATTATCAGAATTTGCAGATAATGCTCACACCC
CTGGATGCCCGGGCGTGGGTCTGTATCATGAGAATTACTGTCTTCCCAGG
GTCCCTGTCTTGTATCAGCTTCTCTAAAAAAAAAGCCCCACTCCTAAAGA
CTTGGTTGAGGGGTAAGATCAAGGAAGTGGAAACTCCGGCATGCCTCATA
CTGCGTCCCCCGGGCCTTTGCCTTATCTTGGTTAGAATCCACTAATGGCA
CAGTACCCCTTTCGTCCGCATTTTTCCTCTCCCTTCCCGTCCCAAATTTG
TTGATTCTCCCCCCCCTACCTTCCCCTCCCTATCTTTTGCCCTTTTCTCC
CCCCATTCTTTCTCCTCTCCCTTTTTCTCCGCTTTTATTCGTCTTTTTCA
CCCCCTTTTTTCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_g06.g1 MSMg01no341_g06.g1 CHROMAT_FILE:
MSMg01no341_g06.g1 PHD_FILE: MSMg01no341_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:38 2005
         (376 letters)



>mm_chr1_40948227_40949001
          Length = 775

 Score =  630 bits (326), Expect = 0.0
 Identities = 358/376 (95%), Gaps = 13/376 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggccagcctttggaatttagggatacatgtctcgaagtattaaaatacacacacacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aaggccagcctttggaatttagggatacatgtctcgaagtattaaaatacacacacacac 272

                                                                       
Query: 61  acacacacacacacacacacacacacacacacacacagaggaggccaggagagggatgac 120
           ||||||||||||||||||||||||||            ||||||||||||||||||||||
Sbjct: 273 acacacacacacacacacacacacac------------aggaggccaggagagggatgac 320

                                                                       
Query: 121 tccatggaggagatcctgtggtacagctgggatggtcagaggttcaatccccaacataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 tccatggaggagatcctgtggtacagctgggatggtcagaggttcaatccccaacat-aa 379

                                                                       
Query: 181 aaaatcaaaacacagttttgaggtgttaatggttctcagagttataaaactagacccacc 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaaaccaaaacacagttttgaggtgttaatggttctcagagttataaaactagacccacc 439

                                                                       
Query: 241 tagaacttgataagatctagattgttaggtcccatccccagataggaacatatgattatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tagaacttgataagatctagattgttaggtcccatccccagataggaacatatgattatc 499

                                                                       
Query: 301 agaatttgcagataatgctcacacccctggatgcccgggcgtgggtctgtatcatgagaa 360
           ||||| ||||||||||||||||||||| |||||||||||| |||||||||| ||||||||
Sbjct: 500 agaatctgcagataatgctcacacccccggatgcccgggcatgggtctgtagcatgagaa 559

                           
Query: 361 ttactgtcttcccagg 376
           ||||||||||||||||
Sbjct: 560 ttactgtcttcccagg 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 775
Length adjustment: 9
Effective length of query: 367
Effective length of database: 766
Effective search space:   281122
Effective search space used:   281122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)