BAC Information

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BAC

Clone NameMSMg01-341K03
Chromosome1 (Build37)
Map Location 66,212,677 - 66,213,115
singlet/doubletsinglet
Overlap genenone
Upstream geneIdh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786
Downstream geneMtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341K03.T7 (MSMg01no341_k03.b1)MSMg01-341K03.TJ (MSMg01no341_k03.g1)
ACCAG455381AG455382
length737773
length of high quality
(start - end)
542 (41 - 582)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no341_k03.b1 PHD_FILE: MSMg01no341_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:56 2005CHROMAT_FILE: MSMg01no341_k03.g1 PHD_FILE: MSMg01no341_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TAAAGTTATACCTTTACACACCCTTTTTATTTTAATCTCTCCTGCTTTCT
TAGGGCACATATAATTTGCATATGACATCGAGTTTTGTTTTTAATTTAGT
TTGAAATTTTTGCTCTGTTTTCTCCATTTCTGTTCATTATAATTAAAATT
ACTTTAAGATGTAAATCTTCAGGTTTGGTATTTACTTTGTATTTTTCAAA
ACTGCTTCTTCACTCATCTTCTTTGCTTTTCTTCACTTTTTCCTGCCTTC
CTCCCTCCCTTTTCTTTATTTGTTTATTTCCCTTATTCTTGCCAATAACA
CAATATCACAGACCATGAAAACATTTTTTAAATGTATTTTGGCTTATGGT
TCTGAAGTCCAAGATCAAGGGTCAACATCTAATGATGGTTTTCTTGGTGG
CAAAATCCCAGGACTGTACAAGACACCACCCAACAAGAGACAGGGAGTGC
ATTTATCTTTGTCATCTGGCCACCAGTCCTCAGTGATGGGATTTTATCCT
GATGGCCTTGTATAACTCTAATTACTTTCCCAAAGCACCACCTCCAGGCA
ACCTATTGCATTGCTTCCACTCCTTACAGGGGACAAAATTTTTAAACCTA
AGCCCTGGGGCGTGTTGTATTTTATCTAATCCCACCTTATGTCCCGTTAT
TGGCTTTTTTCTTGAACTACCCATCTTTTTCTCAAAA
TTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCAT
GAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTC
CTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCC
TGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATC
TCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGCT
GATTTTGTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCTCTG
AGTTTCAGTGGTCATAGCACTCTCTGTAGGCAAGCTCTCCTCTCTCAGGG
AAGGTGTACAGTTATCTGGTGTTCGCACCCCCTCCTGCCTGAATGCGAAC
GCCCTCGCTTTGATCCCTCCCATCATCCTGCGTTGCCTTGCCCCTCTCTG
CTTCTTTTTTCCTCCCCCTTCTACCTTTCCTTTTTTTTCCGTCCCCTCGT
CGCTTTCTTCCTTTTTCCATCTGTTTCTCCCCCCCGTTCCTCCTTTCTCT
TTTTTTCCCCCCCTCCCTTTCCTTTCTTCCTCCCCCTTTTTCTTTTCCTT
TTCCCCTTTTACCTTCTTTTTCCCTTTTTCTCTCTTTTTTCCCCGCCTCT
TTCCCCCCCCTTTTTCCCTGCTTGTTTTCCCTTTCCTATCCCCTTCCATC
TTTTCCATCCTTCGCGTCTGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_k03.b1 MSMg01no341_k03.b1 CHROMAT_FILE:
MSMg01no341_k03.b1 PHD_FILE: MSMg01no341_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:56 2005
         (542 letters)



>mm_chr1_66212174_66213115
          Length = 942

 Score =  849 bits (439), Expect = 0.0
 Identities = 439/439 (100%)
 Strand = Plus / Minus

                                                                       
Query: 104 atttagtttgaaatttttgctctgttttctccatttctgttcattataattaaaattact 163
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 atttagtttgaaatttttgctctgttttctccatttctgttcattataattaaaattact 883

                                                                       
Query: 164 ttaagatgtaaatcttcaggtttggtatttactttgtatttttcaaaactgcttcttcac 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 ttaagatgtaaatcttcaggtttggtatttactttgtatttttcaaaactgcttcttcac 823

                                                                       
Query: 224 tcatcttctttgcttttcttcactttttcctgccttcctccctcccttttctttatttgt 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 tcatcttctttgcttttcttcactttttcctgccttcctccctcccttttctttatttgt 763

                                                                       
Query: 284 ttatttcccttattcttgccaataacacaatatcacagaccatgaaaacattttttaaat 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ttatttcccttattcttgccaataacacaatatcacagaccatgaaaacattttttaaat 703

                                                                       
Query: 344 gtattttggcttatggttctgaagtccaagatcaagggtcaacatctaatgatggttttc 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gtattttggcttatggttctgaagtccaagatcaagggtcaacatctaatgatggttttc 643

                                                                       
Query: 404 ttggtggcaaaatcccaggactgtacaagacaccacccaacaagagacagggagtgcatt 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ttggtggcaaaatcccaggactgtacaagacaccacccaacaagagacagggagtgcatt 583

                                                                       
Query: 464 tatctttgtcatctggccaccagtcctcagtgatgggattttatcctgatggccttgtat 523
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tatctttgtcatctggccaccagtcctcagtgatgggattttatcctgatggccttgtat 523

                              
Query: 524 aactctaattactttccca 542
           |||||||||||||||||||
Sbjct: 522 aactctaattactttccca 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)