BAC Information

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BAC

Clone NameMSMg01-341K12
Chromosome1 (Build37)
Map Location 52,032,496 - 52,228,447
singlet/doubletdoublet
Overlap geneStat4, LOC100042634, Stat1, Gls
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014
Downstream geneLOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341K12.T7 (MSMg01no341_k12.b1)MSMg01-341K12.TJ (MSMg01no341_k12.g1)
ACCAG455399AG455400
length753792
length of high quality
(start - end)		415 (65 - 479)298 (76 - 373)
definitionCHROMAT_FILE: MSMg01no341_k12.b1 PHD_FILE: MSMg01no341_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:58 2005CHROMAT_FILE: MSMg01no341_k12.g1 PHD_FILE: MSMg01no341_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,032,496 - 52,032,909)(52,228,150 - 52,228,447)
sequence
CTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCTTGCTCCCCAAATGATGAGTTCAAAATTGCATAATGTTTTTC
TCTTAAGATGGCTTCTAGACACTACCTCACTAAACTAACACCTTCAAGAG
ACTAGCAAATACAAGAGTCATATGCTGAGCCCCTCCCGCCTGCCTTATCA
GTGTGCTGCTGTGGAATGAAGGCTGGAATGGAGGCAGGCAGATCCTCCAC
CCCACGAGTGTTTATTTGACTTGCAAGTGTCTCTGAAGGCTTCTAAAGAG
CATGCTCTCAGCTGATGGTTTATACAGAATCTTCTAGCTTGTTAGGCCTA
TAAAGTTCTGAGGTGAGTGAAGGTTCTTAGTGAGACTGGCGGGGACCCAT
CTTTGCATCTTTAACATTTAGACCTCACTTTTACATCAAGCATTGTTTCC
TTCTAGGAATTCAAACCACTAGAATCTGCACACCAATTGCCTTTTTGGTG
TTTGGAATTATTCCCAATCAAATAAAGTCTCAATAGTTCATCCCAACACT
ATAGTCTGGGGTCCTGGCTTTTGTCAGCATCCTTGGTACGGGTTGAGAAA
TATTGGGTGACATCATCTATCATGGAAGTTGTCCCCCCAAGCTTCGGAAT
TTTGCCGTTTCTCCCTTCCCAAATTTTCCATCGTTTCCTTACGCCTTTTG
TCTTTTCCCCATTTAAACCGCTCGTTCCTACCTTCCCTTTCCCCCTATCC
CCT

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCGGTATGGTAGGAGGTGCCAGAGA
ATAGCCTGCCATTTCAGTTTCCTGTGGCAGCAGTCAAACAGGCTGTCACA
ATCCTCCACTTCAGATAAGGCTGTGACCTAGATACGCTACAGCAGTAGTG
ATGGATAATCAAAAGTGGTGGCTTTGTAAATGTTTTACGGGATTAATCAC
ATAAGCTAGATGTGGGTTATCGGAGGCTTCTCCTTCGGTAGGTGCACTAT
GTAGAACACTTAGGTGGGAGGGGCACCTGCTGTACCCTCCTGGGTTTCAG
CCGTCCACCCCTGGGGGGAGTGGGGGAGCCCCCCCCCCTTTTTTCTTTTC
TGTTTTTTGCTCCCCCCCCCCCCTTTCCCCCTTAACCCCCCCCTTATCTC
CCCCCTCCTCTCTTTTTTATCCTATCATTTTGTTTTTCCCCTATTTTTTG
TATTTTTTTCTTTTCCCCCTTTTTCCTATTCCGTGTTTGACTTCTCCTTT
CCTCTCACGTTACCCCTTCCCTCCTCCTCTTTTTCCTTTCTTTTTATTAT
TTATCTTTCCCATCCTCTCCTCCCCCTTTTCTTACCTTCTTTTTTTCCTT
TGGCTTCCTTTACCCATTTTTCCTTTTATACCACCCGTATTCCTTTTTTG
CCTGATTTTCTTCCCTTTTTCCCTTCCCCTTCTTATTTCTTTCTCTTTCC
ACCCCCTTTTTTTCTCTTTTTTTCCTCCCCCTTTTTCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_k12.b1 MSMg01no341_k12.b1 CHROMAT_FILE:
MSMg01no341_k12.b1 PHD_FILE: MSMg01no341_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:58 2005
         (415 letters)



>mm_chr1_52032296_52033110
          Length = 815

 Score =  785 bits (406), Expect = 0.0
 Identities = 412/414 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccaaatgatgagttcaaaattgcataatgtttttctcttaagatggcttctagacacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccaaatgatgagttcaaaattgcataatgtttttctcttaagatggcttctagacacta 260

                                                                       
Query: 61  cctcactaaactaacaccttcaagagactagcaaatacaagagtcatatgctgagcccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcactaaactaacaccttcaagagactagcaaatacaagagtcatatgctgagcccct 320

                                                                       
Query: 121 cccgcctgccttatcagtgtgctgctgtggaatgaaggctggaatggaggcaggcagatc 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccgcctgccttatcagtgtgccgctgtggaatgaaggctggaatggaggcaggcagatc 380

                                                                       
Query: 181 ctccaccccacgagtgtttatttgacttgcaagtgtctctgaaggcttctaaagagcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccaccccacgagtgtttatttgacttgcaagtgtctctgaaggcttctaaagagcatg 440

                                                                       
Query: 241 ctctcagctgatggtttatacagaatcttctagcttgttaggcctataaagttctgaggt 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctcagctgatgatttatacagaatcttctagcttgttaggcctataaagttctgaggt 500

                                                                       
Query: 301 gagtgaaggttcttagtgagactggcggggacccatctttgcatctttaacatttagacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagtgaaggttcttagtgagactggcggggacccatctttgcatctttaacatttagacc 560

                                                                 
Query: 361 tcacttttacatcaagcattgtttccttctaggaattcaaaccactagaatctg 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcacttttacatcaagcattgtttccttctaggaattcaaaccactagaatctg 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no341_k12.g1 MSMg01no341_k12.g1 CHROMAT_FILE:
MSMg01no341_k12.g1 PHD_FILE: MSMg01no341_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:58 2005
         (298 letters)



>mm_chr1_52227950_52228647
          Length = 698

 Score =  561 bits (290), Expect = e-164
 Identities = 296/298 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcggtatggtaggaggtgccagagaatagcctgccatttcagtttcctgtggcagcagtc 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tcggtatggtgggaggtgccagagaatagcctgccatttcagtttcctgtggcagcagtc 439

                                                                       
Query: 61  aaacaggctgtcacaatcctccacttcagataaggctgtgacctagatacgctacagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaacaggctgtcacaatcctccacttcagataaggctgtgacctagatacgctacagcag 379

                                                                       
Query: 121 tagtgatggataatcaaaagtggtggctttgtaaatgttttacgggattaatcacataag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tagtgatggataatcaaaagtggtggctttgtaaatgttttacgggattaatcacataag 319

                                                                       
Query: 181 ctagatgtgggttatcggaggcttctccttcggtaggtgcactatgtagaacacttaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctagatgtgggttatcggaggcttctccttcggtaggtgcactatgtagaacacttaggt 259

                                                                     
Query: 241 gggaggggcacctgctgtaccctcctgggtttcagccgtccacccctggggggagtgg 298
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 258 gggaggggcacctgctgtaccctcctgggtttcagccgtccatccctggggggagtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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