BAC Information

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BAC

Clone NameMSMg01-341L08
Chromosome1 (Build37)
Map Location 126,158,967 - 126,339,228
singlet/doubletdoublet
Overlap genenone
Upstream geneDpp10
Downstream geneLOC666998, Actr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341L08.T7 (MSMg01no341_l08.b1)MSMg01-341L08.TJ (MSMg01no341_l08.g1)
ACCAG455438AG455439
length830781
length of high quality
(start - end)		174 (64 - 237)389 (76 - 464)
definitionCHROMAT_FILE: MSMg01no341_l08.b1 PHD_FILE: MSMg01no341_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:02 2005CHROMAT_FILE: MSMg01no341_l08.g1 PHD_FILE: MSMg01no341_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,339,055 - 126,339,228)(126,158,967 - 126,159,355)
sequence
CTTTATTTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATCATTCATCCTTATGTTAATATAAAGTAGATATATTGGCACATTT
ATCTAACAATTTTTACCAAGATGTCATGAATCAATGTTACCTAATGATTT
TGTTTTTAGGATAAATCCTAAGGGGTAAGAAAACAGCCTGCATGGCTCTT
ATAAGTGTGTATGTGTTTGTGTTTGTGTGAGTGTGTGCCCCGCCATCTTC
CTCTCCTTTCCCCCCCCTTCCTTTTCCTTTTCTCCTTTTTTTTTTCCATT
TTCCCTTTTTTCTCTCTTTTCCCCTTCCCTTCCTTCTCCTTTTTTCTTCT
TTTTCCCCTTCCTCTTTCTTTTAACCTTTCTTTAACTCCCCTACCCTTTT
CCTTTATCCCTCCTCTTTATCCTCCTTTTTTTTTATTTCCTATACTTTTC
TTTCCCCCCTTTTCCCTTCCATTCTATTTTTTTTTTCCTACTTTCTCCCT
TTCCCTTTCCTCCTCTTTTTTCTCTTTCTCCCTTTCCCTTTTTCCTTTTA
TTTCCCCCCCTCCCTTTTTTCCCCCCCCCTTTATTCTTTTTTTCTCCCTC
CTTTCTTTCCCCGCTACCATATCTATTCCTATCCTTTTATTTCCCCCTCC
CTCCTTTCCCCTTTTCCCTCCCCTTTTTTCACCACCTTCTTTTTCACTCT
TCTTCTCTTTTCCTCCCATTTTTCTCCTTTTTTTTTTTCCTTTATTCCAC
ACCTTTTCTTAAATTTACCCATCATTATTTCTCCCTTTTTTTTTTCTTTT
CCCCTCTTTTCTTTCTCCCTTTCTTTCATC

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTCCCTATGCAAGGACACTGAGCC
TTCTCTGGAGCACCCAAATAAATGTGTTTTAAAACCATGATGCATGCTAT
ATAATGAAACTAGTACCCTTTCCCTGGAATGACCATCTAAAATTTCTTTA
TTTATATGAGAATGACATTGAAGAGAAAGTCTTTCTATGCCATATAACAT
TCTTGCCTAGGAAGTAGAATTCAAGTAACAGTTGCTAGGAAACACATTTT
GAATTTTCTTTGAGGAATAACGGAATCTGTGCCCTTTATTTTCAATTTCT
CTAATGACCAAAGGCATGTCTTCAACTCTTCTTAATCTATATTCTTTCTG
GGCACTTGGGAAACATTTATTGCTGCATAAAGAAATCAATTCTTTCTTTA
AATGAACCTAAAATCTGTTTTTAATTCATGTATTTGGGAACCATTGTACT
ATCTTCCTTGTGTCAGTACCTTGCCAAATTTATCTCCGGATTTTCTTTTC
TAAAATCTCGCGCTTACTTATGCTTTAAAAATCCGCTGTTGTGCTTTTTC
CTATTTATCCCCTTCTTTTTCATTCCCACTTCCTTTTTCTTTTTTTTTAT
TCTCCCAATATTTATTTTCCTTCTTTCCCCCTTATCCCTCCTTTCCACAA
CCCTTTTCTCTTTCCCATTTTCCCTATATTCCTTTTTTTTCCCCATTTCC
TTCCCCCTTATTTCCTCTATATACCTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_l08.b1 MSMg01no341_l08.b1 CHROMAT_FILE:
MSMg01no341_l08.b1 PHD_FILE: MSMg01no341_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:02 2005
         (174 letters)



>mm_chr1_126338888_126339461
          Length = 574

 Score =  329 bits (170), Expect = 7e-95
 Identities = 173/174 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttatgttaatataaagtagatatattggcacatttatctaacaatttttaccaagatg 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ccttatgtttatataaagtagatatattggcacatttatctaacaatttttaccaagatg 282

                                                                       
Query: 61  tcatgaatcaatgttacctaatgattttgtttttaggataaatcctaaggggtaagaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tcatgaatcaatgttacctaatgattttgtttttaggataaatcctaaggggtaagaaaa 222

                                                                 
Query: 121 cagcctgcatggctcttataagtgtgtatgtgtttgtgtttgtgtgagtgtgtg 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 cagcctgcatggctcttataagtgtgtatgtgtttgtgtttgtgtgagtgtgtg 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no341_l08.g1 MSMg01no341_l08.g1 CHROMAT_FILE:
MSMg01no341_l08.g1 PHD_FILE: MSMg01no341_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:02 2005
         (389 letters)



>mm_chr1_126158767_126159555
          Length = 789

 Score =  745 bits (385), Expect = 0.0
 Identities = 388/389 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtccctatgcaaggacactgagccttctctggagcacccaaataaatgtgttttaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtccctatgcaaggacactgagccttctctggagcacccaaataaatgtgttttaaaac 260

                                                                       
Query: 61  catgatgcatgctatataatgaaactagtaccctttccctggaatgaccatctaaaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgatgcatgctatataatgaaactagtaccctttccctggaatgaccatctaaaattt 320

                                                                       
Query: 121 ctttatttatatgagaatgacattgaagagaaagtctttctatgccatataacattcttg 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttatttatatgagaatggcattgaagagaaagtctttctatgccatataacattcttg 380

                                                                       
Query: 181 cctaggaagtagaattcaagtaacagttgctaggaaacacattttgaattttctttgagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctaggaagtagaattcaagtaacagttgctaggaaacacattttgaattttctttgagg 440

                                                                       
Query: 241 aataacggaatctgtgccctttattttcaatttctctaatgaccaaaggcatgtcttcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataacggaatctgtgccctttattttcaatttctctaatgaccaaaggcatgtcttcaa 500

                                                                       
Query: 301 ctcttcttaatctatattctttctgggcacttgggaaacatttattgctgcataaagaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcttcttaatctatattctttctgggcacttgggaaacatttattgctgcataaagaaa 560

                                        
Query: 361 tcaattctttctttaaatgaacctaaaat 389
           |||||||||||||||||||||||||||||
Sbjct: 561 tcaattctttctttaaatgaacctaaaat 589


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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