BAC Information

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BAC

Clone NameMSMg01-341L23
Chromosome1 (Build37)
Map Location 11,189,592 - 11,189,997
singlet/doubletsinglet
Overlap genenone
Upstream geneArfgef1, Cpa6, LOC433271
Downstream geneC030045D06Rik, A830018L16Rik, LOC665262
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341L23.T7 (MSMg01no341_l23.b1)MSMg01-341L23.TJ (MSMg01no341_l23.g1)
ACCAG455466AG455467
length797794
length of high quality
(start - end)
410 (42 - 451)358 (72 - 429)
definitionCHROMAT_FILE: MSMg01no341_l23.b1 PHD_FILE: MSMg01no341_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:05 2005CHROMAT_FILE: MSMg01no341_l23.g1 PHD_FILE: MSMg01no341_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTAGCTCTAACTTGTTGGCTCACTTTCTAGTAACATCATGGTTTCTTT
CATGTTGAATGAGTTTTAAGTGTTACCAGGGAGCTGTTGGTTAGTGCTAG
GGTGTGTGTGCCACTCCTGCTCCATGTGGGTGGTGGTCTCTCCAACATTT
TTTGTTTTGAATTCCTTTTTGAGACAGGGTCTCACTACATGTCCCTGGCA
TTCTAGGAACTCACTATATAGACCAGGTTGCTCATGAACTCACAGAAATT
GTACTGGGATTAAAAGCACCATACCTGGCTACTACAATAAAGCTGCCTTT
GTGTTCTTTTCCATCACAGATAGTGAAACCCAACTCCGGAGAGACATGGT
TTTCTGTCAAAGTCTTGTGGCCACTGTCTGTGCCTTCTCTGAGCAGCTCA
TGGCTGCCTTATACCAGATGTTTGACAACCGCCAGGAAAATGAAATGGAG
ACTTTTGAAGCCTGCAGGATGTGGTTGGATCTAAATTGCCATGCTTCGTG
TGCTTTTTTATCTCTTTCCCCTTTCGTTCTTTTTTTTTTTCATTTTCTTT
CCTTTTTTTTTTTTTTTTGCCCCCCTTTTTTAACCATTTATTCTCCCTTA
TTTATCTATTTCACCCCCCTTTCTTTTCCTTTTTAATATTTAAATATTCC
TTTTTCGCCCTTTCTTCTTTTTTACTTTTTTCCCCCCCCTTTTTTCCTTC
CTTTTTTTTTTTTCCCTTTTCACCCCTCCCCCTTTTATTACCTTTCT
GATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATCTTGGTAGATTTTCCTTTGAAGAGTAT
GAAGCGTTCTAATCTTTTTTGATAAATTTTGTTTAAAGTCAGTTTTATTC
CATATTAGGATGGCTACTCCAACATTTTTCTCAGAATCACTTAATTGGAA
AATTTTTTTCCAGCCTTTCACTCTAAGATAGTGTCTATCTCTGTCACTGA
TGTGCATTTCCTATATCCAGCAATATGCTGGATCCTGTTTATGTGTCCAG
GGTTTTGGTCTATGTCTTTTTATTGGGGAATTGAGTCCATTGGTATTAAG
AGATATTAAGAACTAGAGATTGTTGCTTCCTGTTATTTTTGTTGCTAGAG
ATGAAATTATGTTTGCGTAGCTATCTTCTCTCGGGTTTGTTGTAAGAAGA
TTAACCTCTCGCCTTTTCTTGGGTGGATTTTTCCTTTTTTTGTCTGCTGC
TTTTCCCTTACATCCCTCTTGGAAACTTGCCCTTTTTTACCCCCCCTTTC
TCTTCCTTCCCCCCCTCACTCTCTCTATACTTTCCCCTTCTCCTTCTTTT
CCCCCTTTTTTATTTTTTATTTTTATTCCCCTTTTTTTCCTCCCCCCATT
CCCTACTTTTTTTTCTATTCGTCTCCCCTTTTTTTTTTTTTTTTACTTCT
CCCCTCCCCTTTTCTTTTTTCCTCCCCCTACCTTTTTTTTCCTCTTTTCT
CACATCCTTCTTTCCCCCTTTATCTATTCCCTTTCCCTTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_l23.b1 MSMg01no341_l23.b1 CHROMAT_FILE:
MSMg01no341_l23.b1 PHD_FILE: MSMg01no341_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:05 2005
         (410 letters)



>mm_chr1_11189388_11190197
          Length = 810

 Score =  731 bits (378), Expect = 0.0
 Identities = 399/406 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactagctctaacttgttggctcactttctagtaacatcatggtttctttcatgt 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactagctctaagttgttggctcactttctagtaacatcatggtttctttcatgt 264

                                                                       
Query: 65  tgaatgagttttaagtgttaccagggagctgttggttagtgctagggtgtgtgtgccact 124
           |||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 265 tgaatgagttttaagtgtaaccagggagctgttggttaatgctggggtgtgtgtgccact 324

                                                                       
Query: 125 cctgctccatgtgggtggtggtctctccaacattttttgttttgaattcctttttgagac 184
           |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 325 cctgctccatgtgggtggtggtctctccaacagtttttgttttgaatttctttttgagac 384

                                                                       
Query: 185 agggtctcactacatgtccctggcattctaggaactcactatatagaccaggttgctcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agggtctcactacatgtccctggcattctaggaactcactatatagaccaggttgctcat 444

                                                                       
Query: 245 gaactcacagaaattgtactgggattaaaagcaccatacctggctactacaataaagctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaactcacagaaattgtactgggattaaaagcaccatacctggctactacaataaagctg 504

                                                                       
Query: 305 cctttgtgttcttttccatcacagatagtgaaacccaactccggagagacatggttttct 364
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 cctttgtgttcttttccatcacagacagtgaaacccaactccggagagacatggttttct 564

                                                         
Query: 365 gtcaaagtcttgtggccactgtctgtgccttctctgagcagctcat 410
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtcaaagtcttgtggccactgtctgtgccttctctgagcagctcat 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)