BAC Information

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BAC

Clone NameMSMg01-341M06
Chromosome1 (Build37)
Map Location 68,558,940 - 68,717,366
singlet/doubletdoublet
Overlap geneErbb4
Upstream geneKif22-ps
Downstream geneLOC667842, EG241084, Ikzf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341M06.T7 (MSMg01no341_m06.b1)MSMg01-341M06.TJ (MSMg01no341_m06.g1)
ACCAG455480AG455481
length767765
length of high quality
(start - end)
413 (45 - 457)418 (73 - 490)
definitionCHROMAT_FILE: MSMg01no341_m06.b1 PHD_FILE: MSMg01no341_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:06 2005CHROMAT_FILE: MSMg01no341_m06.g1 PHD_FILE: MSMg01no341_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,716,958 - 68,717,366)(68,558,940 - 68,559,357)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAAAAATATGTATTATTCTGAAGGGTAATCTAAGCAGAACAACTA
TTTCCCATATAAGTATGTGCATTAATCTTTCCATCAATTATCAGTCTTGT
GTTAGGCCAGACAGGTGTGCGCTACAGCCACTGAGTTGGCTGGGTCCAGA
TTCTTTTCTAATATTTGATGACAAGTGGATAATCTGACAGAAAATAAGAA
TTACACTATCATCATACAATTTATTTTTGTATAGTTTGATTCCATATTAA
TGAATAAAAGTGTAAATAACATATAAACACCACTTTGATTCATTTATGAG
TAGAATTCAAGGAATAATGGAAACTTATGGTGGCTCCGTATCAGCATTAG
GGTCCTCTGCAGTCCCCTTTTTGCACATAAACAGCAGAATAGATTCTGAC
CAAGTTTGTTGTTGTATGCAATAACACTGACTCCTGTGTCATAAACATAC
TGAAACGCTGGCTTCTCTATCCAGACCCCAGTATACCTGAGATCAGTTTG
TCTGGGTTTTCTGCGCGGGTTTCCTCTCTCCCCCTTGCTTATTTTCCCCT
GAAGCCCCTTTCTGGTTTTACCCCCCTAATGTTTGACCAAGGCCTTGACA
CACTGGAACTCACTATCCACTTACCCCTCATGTCCCCCCCCTTGGATTCC
CCCTATGGCATAATCCACCACTATTGCGCCCCCGTTTGCTTTCGTGCCCT
TTTCCCCCTTATCCCCT
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTCCTTTTATCAGTACTTAGCAATGCA
GATTGGTATCACTCACATGGGATAACTCCACAGGAATAACCATCAACAGT
TTGAGAACATCACAGCATGCAACATTAGTATTTATGATACAAAAAATGCA
TCCATTTTTCTATATAGTTTTTCAATGACCTGTTTTCTGTTGAAAATAAC
TCTAAAATTTACATAGATAAGTGAGACAGCTGTTTATGATTCACAAATAG
TACAGTATATTATAATCTACAACAGAAAGTTAATTTGAAGAATTCAATTT
CTGTTCAAAACATAGTTTTACTATCTCCGTAAAGATTGTACATCTAAATT
TGACCATTGCTTATAATCTTATCAATGTTTTTATGAAAGATGTTGAATAT
CAATCCTTATTTAAATTACTTACTGGTGCCAGTAAAAATGCCTCGTGACC
TTAGAATCAAAACTGATGGCTGAAGACACAATAAGGTAGCAGGAAACAGT
TTTAAGACCTTACTTAATTTCTTGATCCAACATCCCCAANAAAATGCCCC
CGAATGGGCTTAAAACTCATGGCTATGGCTATTATAAAATTCTTTCATAC
CCAAGACCTTCAAAAAGTGGGGTCGGAGGTTCGTAAACTTTTACCAACCC
CCTGCCTACTACTTTCGCCTTGCACCGCGGGCTTCTTCTAATATTCCCGC
CCCATTTTTCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_m06.b1 MSMg01no341_m06.b1 CHROMAT_FILE:
MSMg01no341_m06.b1 PHD_FILE: MSMg01no341_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:06 2005
         (413 letters)



>mm_chr1_68716754_68717566
          Length = 813

 Score =  791 bits (409), Expect = 0.0
 Identities = 409/409 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaaaaatatgtattattctgaagggtaatctaagcagaacaactatttcccat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gaattcctaaaaatatgtattattctgaagggtaatctaagcagaacaactatttcccat 554

                                                                       
Query: 65  ataagtatgtgcattaatctttccatcaattatcagtcttgtgttaggccagacaggtgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ataagtatgtgcattaatctttccatcaattatcagtcttgtgttaggccagacaggtgt 494

                                                                       
Query: 125 gcgctacagccactgagttggctgggtccagattcttttctaatatttgatgacaagtgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gcgctacagccactgagttggctgggtccagattcttttctaatatttgatgacaagtgg 434

                                                                       
Query: 185 ataatctgacagaaaataagaattacactatcatcatacaatttatttttgtatagtttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ataatctgacagaaaataagaattacactatcatcatacaatttatttttgtatagtttg 374

                                                                       
Query: 245 attccatattaatgaataaaagtgtaaataacatataaacaccactttgattcatttatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 attccatattaatgaataaaagtgtaaataacatataaacaccactttgattcatttatg 314

                                                                       
Query: 305 agtagaattcaaggaataatggaaacttatggtggctccgtatcagcattagggtcctct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 agtagaattcaaggaataatggaaacttatggtggctccgtatcagcattagggtcctct 254

                                                            
Query: 365 gcagtcccctttttgcacataaacagcagaatagattctgaccaagttt 413
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gcagtcccctttttgcacataaacagcagaatagattctgaccaagttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no341_m06.g1 MSMg01no341_m06.g1 CHROMAT_FILE:
MSMg01no341_m06.g1 PHD_FILE: MSMg01no341_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:06 2005
         (418 letters)



>mm_chr1_68558740_68559557
          Length = 818

 Score =  808 bits (418), Expect = 0.0
 Identities = 418/418 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccttttatcagtacttagcaatgcagattggtatcactcacatgggataactccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttccttttatcagtacttagcaatgcagattggtatcactcacatgggataactccaca 260

                                                                       
Query: 61  ggaataaccatcaacagtttgagaacatcacagcatgcaacattagtatttatgatacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaataaccatcaacagtttgagaacatcacagcatgcaacattagtatttatgatacaa 320

                                                                       
Query: 121 aaaatgcatccatttttctatatagtttttcaatgacctgttttctgttgaaaataactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatgcatccatttttctatatagtttttcaatgacctgttttctgttgaaaataactc 380

                                                                       
Query: 181 taaaatttacatagataagtgagacagctgtttatgattcacaaatagtacagtatatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaatttacatagataagtgagacagctgtttatgattcacaaatagtacagtatatta 440

                                                                       
Query: 241 taatctacaacagaaagttaatttgaagaattcaatttctgttcaaaacatagttttact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatctacaacagaaagttaatttgaagaattcaatttctgttcaaaacatagttttact 500

                                                                       
Query: 301 atctccgtaaagattgtacatctaaatttgaccattgcttataatcttatcaatgttttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctccgtaaagattgtacatctaaatttgaccattgcttataatcttatcaatgttttt 560

                                                                     
Query: 361 atgaaagatgttgaatatcaatccttatttaaattacttactggtgccagtaaaaatg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgaaagatgttgaatatcaatccttatttaaattacttactggtgccagtaaaaatg 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)