BAC Information

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BAC

Clone NameMSMg01-341N19
Chromosome1 (Build37)
Map Location 150,440,045 - 150,440,422
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100042792, LOC435647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341N19.T7 (MSMg01no341_n19.b1)MSMg01-341N19.TJ (MSMg01no341_n19.g1)
ACCAG455553AG455554
length759800
length of high quality
(start - end)
335 (40 - 374)378 (70 - 447)
definitionCHROMAT_FILE: MSMg01no341_n19.b1 PHD_FILE: MSMg01no341_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:13 2005CHROMAT_FILE: MSMg01no341_n19.g1 PHD_FILE: MSMg01no341_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTTAGCTCTCTACCCCATTTTTTTAATAGCATTATTTGATTTTCTAG
AGTCCATCTTCTTGAGTTCTTAATATATATTGGATATTAGTTGCCTATCT
GATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGACCTTTTTGA
CTTATTGACAGTACATTTGCCTTACTGAAGCTTTGCAATTTTATGAGGTC
CCATTTGTCAATTCTTGATCTTACAACAGAAGCCATTGCTGTTCTGGTCA
GGAATTTTCCCCCTGTGCCCTTATCTTCGAGGCTATAGGGGACGACTTTC
TAAATAAATCTCCAGTTTCTTGGCAAATAATATCAACAGTCATTAAACAG
GACCTCGTGAATCATAAATACTTCTGTACAGCATACAGTTAAGAGTGTAT
AGACAGCCTACAGAACTGAAGAAAAAGCTAGCCAGCTATGAATTTGACAG
AGGAATAATAACTAGAACTTACCAAAGACCTTATTCATATTCACACTACC
CAATTCACATTCCTAGGAATTATATTAACCCTCTTGCCCCTGTTTATTCT
TAACACCGTGATGTTCCTTTTCTACCCCTCTTTTCTTTTTAACCACCCTT
TCTTTCGTGTTGGTGGTTTTTTCCCATTACCACTTTTCCTTTTTTCCTTT
TTCCCCCCCTTTATCCTTCTTTTTTTTTTTCCCTTTTTCTTCCCCCCTTT
TTTCCTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTACTACTATAAAAAATATGTCAGCTATGC
AATAACTAAAATTACATCCAACTAACATTTGTTTTAGGCGTTGGAACTGG
ATACATTTATTCTATCTTAATTATAAGAAATATATACTTTTCTAACATAT
GACTGATTTTAAAAAGAATAAAATGGAAAACAATCAAGGCCAGTATTATC
ACTCATTAAAGTCACTTTTATAATGTGTGTGTCAACTAGGGAAAAGAAGA
TGGCTAATAGTATACAGTAAAAATATAAAATATAATTTTACCTGTTATAA
GGCCTTAAGCCTTTATTATGGGAAAATTTAAAGCTGTGAGACAGTTGGAA
TGCTAAGCTCATAAATTCTGAGTGCCTATATTTTTCATTAATAATTAGTA
CATACTCTGGCTATTCTCTAATTTGTCATTCTTTGGCTACATCAGTATCA
CATTTATGTAAATTAAAATAATTCCCCTAATATATCCCCTACTTGTTATC
CTTCCGATCCATCATATATCCTATAATTTCCCTAACACCTCCTTATCATT
TTCCTCCTTTCTGGGTTCCTCTCTCCCCACTTTTTTGCCCCACCCCTCCC
GTTCTTTATTTTTTGTTTCCTCGCCCCTTTCTTATTTATTCTTTCCTCCA
CCCCCCTTCCCCTTTTTATTCTTACTCCCCCCTCCCTTTATTTTCGCTTT
TTCCCTCTTCCTACCTACCCCCCCTTTTCGTTTCCTTTATCCCTTTCCCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_n19.g1 MSMg01no341_n19.g1 CHROMAT_FILE:
MSMg01no341_n19.g1 PHD_FILE: MSMg01no341_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:13 2005
         (378 letters)



>mm_chr1_150439975_150440752
          Length = 778

 Score =  723 bits (374), Expect = 0.0
 Identities = 377/378 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttactactataaaaaatatgtcagctatgcaataactaaaattacatccaactaacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tttactactataaaaaatatgtcagctatgcaataactaaaattacatccaactaacatt 389

                                                                       
Query: 61  tgttttaggcgttggaactggatacatttattctatcttaattataagaaatatatactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgttttaggcgttggaactggatacatttattctatcttaattataagaaatatatactt 329

                                                                       
Query: 121 ttctaacatatgactgattttaaaaagaataaaatggaaaacaatcaaggccagtattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttctaacatatgactgattttaaaaagaataaaatggaaaacaatcaaggccagtattat 269

                                                                       
Query: 181 cactcattaaagtcacttttataatgtgtgtgtcaactagggaaaagaagatggctaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cactcattaaagtcacttttataatgtgtgtgtcaactagggaaaagaagatggctaata 209

                                                                       
Query: 241 gtatacagtaaaaatataaaatataattttacctgttataaggccttaagcctttattat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gtatacagtaaaaatataaaatataattttacctgttataaggccttaagcctttattat 149

                                                                       
Query: 301 gggaaaatttaaagctgtgagacagttggaatgctaagctcataaattctgagtgcctat 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 148 gggaaaatttaaagctgtgagacagttggaatgctaagctcataaattctgactgcctat 89

                             
Query: 361 atttttcattaataatta 378
           ||||||||||||||||||
Sbjct: 88  atttttcattaataatta 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)