Query= MSMg01no341_p03.b1 MSMg01no341_p03.b1 CHROMAT_FILE:
MSMg01no341_p03.b1 PHD_FILE: MSMg01no341_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:19 2005
(485 letters)
>mm_chr1_130893031_130893914
Length = 884
Score = 868 bits (449), Expect = 0.0
Identities = 474/483 (98%), Gaps = 4/483 (0%)
Strand = Plus / Plus
Query: 5 gaattcagatttttaagacacagactcaacacttgttacttattatgcaattttcttaaa 64
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatttttgagacacagactcaacacttgttacttattatgcaattttcttaaa 264
Query: 65 accaagttgacaacagatgcctttctgggatgggtgtggctttcatgtcaggaagtaatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accaagttgacaacagatgcctttctgggatgggtgtggctttcatgtcaggaagtaatg 324
Query: 125 ttaattgttttcatgagctacaacttctggagaagaagtcagattgtcacctaagatggt 184
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 ttaattgttttcatgagctacaacttctggagaagaagtcagatcgtcacctaagatggt 384
Query: 185 cactgaagcacctatttttttaaaaaaaatgt--ttcttttaattttaagattataatgc 242
|| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||
Sbjct: 385 caatgaagcacctatttttt-aaaaaaaat-tacttcttttaattttaagattataatgc 442
Query: 243 aattacatcatttctccttgccttttctccttttaaacccttgctccttttcaaattcat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aattacatcatttctccttgccttttctccttttaaacccttgctccttttcaaattcat 502
Query: 303 gacctcttttacattaaacacacacacacacacacacacacacacacacaaatacaacct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gacctcttttacattaaacacacacacacacacacacacacacacacacaaatacaacct 562
Query: 363 gctcagtctatataattgtcttagttagggtttccattactatgatgaaacaccatggcc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gctcagtctatataattgtcttagttagggtttccattactatgatgaaacaccatggcc 622
Query: 423 agaagtaacatgaagaggaaagggtttatttggcttacatgtatacaatgtagtccatta 482
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 623 agaagtaacatgaagaggaaagggtttatttggcttacacgtatacaatgtagtccatta 682
Query: 483 ttg 485
|||
Sbjct: 683 ttg 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 884
Length adjustment: 10
Effective length of query: 475
Effective length of database: 874
Effective search space: 415150
Effective search space used: 415150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no341_p03.g1 MSMg01no341_p03.g1 CHROMAT_FILE:
MSMg01no341_p03.g1 PHD_FILE: MSMg01no341_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:19 2005
(403 letters)
>mm_chr1_130927690_130928492
Length = 803
Score = 764 bits (395), Expect = 0.0
Identities = 401/403 (99%)
Strand = Plus / Minus
Query: 1 agtgcagggagctctaatgtgtaaggaacagtagagaggcaagaactgaggggcagggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 agtgcagggagctctaatgtgtaaggaacagtagagaggcaagaactgaggggcagggtg 544
Query: 61 tctgagagcgaaggaaagagaaggttcatatgagaaacaggtgaaaggaaaaaagagaag 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tctgagagcaaaggaaagagaaggttcatatgagaaacaggtgaaaggaaaaaagagaag 484
Query: 121 gaagagcaggtacagttcggtgacagaaatgaagagagtggagcacagggttctagggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gaagagcaggtacagttcggtgacagaaatgaagagagtggagcacagggttctagggag 424
Query: 181 agagcagagttcgtgatgccaaatacaaaagactttcttagaattacaacatagcaacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 agagcagagttcgtgatgccaaatacaaaagactttcttagaattacaacatagcaacca 364
Query: 241 agttctgggatctacactaagggcagagaaaagagctttgatggaagagcaacaccaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agttctgggatctacactaagggcagagaaaagagctttgatggaagagcaacaccaaac 304
Query: 301 cagattgcaaggagttgagaaaggagtggataaaaaacagaggggatgtctccaaggtaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cagattgcaaggagttgagaaaggagtggataaaaaacagaggggatgtctccaaggtaa 244
Query: 361 ctagatagcagtctagcgccaatgtgtgttaaaatgtgtcaag 403
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 243 ctagatagcagtctagcgccaatgtgtgttaaaatgcgtcaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space: 312836
Effective search space used: 312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
