BAC Information

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BAC

Clone NameMSMg01-341P09
Chromosome1 (Build37)
Map Location 53,474,353 - 53,474,668
singlet/doubletsinglet
Overlap geneLOC100042162
Upstream geneNab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866
Downstream geneDnahc7, Stk17b, Hecw2, 4930511H11Rik, Gtf3c3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341P09.T7 (MSMg01no341_p09.b1)MSMg01-341P09.TJ (MSMg01no341_p09.g1)
ACCAG455628AG455629
length792778
length of high quality
(start - end)
235 (67 - 301)316 (77 - 392)
definitionCHROMAT_FILE: MSMg01no341_p09.b1 PHD_FILE: MSMg01no341_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:20 2005CHROMAT_FILE: MSMg01no341_p09.g1 PHD_FILE: MSMg01no341_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:21 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGATTTTTCCAAGACTTTTATCATGAATGGATGTTGGATTTGGTC
AAATGCTTTCTCAGCATCTAAGGAGATTATCATGTGGTTTTTGTCTTTGA
GTTTGTTTATATAGTGGATTACGTTGATGGATTTCTTCATATTAAACCAT
CCCTGCATCCCTGGAATGAAACCTAACTTGGTCAGGATTGATGATTGTTT
TGAATTGTTCTTGGATTTGGTTAGCGAGAGTTTTATTGTGTATTTCTGCA
TCGATATTCATAATTTTTATTGGTCTGAAGTTCTCTCTCTTTGTTGTATC
CTTCTGTGATTTATCCATCAAAGTTTTTTCGGCTTTTTTTCTTGATTTGC
CTATTATCCCTTCTTGCTTCTATTATTGTACTTGTTTTGCTCCGTCCTCT
TCTTTATGCCTCCCTTTTACCCCTTCCTATCATTTCTTCCCCCATATTCG
ACATGAACTCTGTTGCCTTCTTCCTCCTTGTTCTTTTTTTTCCCCTTTCC
CTTTCCCCTTTTCCTTCCTTTTCTTTTTCCTCTTCATTCCCCTCTTTCTT
TTTCTTTCCCCCCCTTTTCTTTCCTTTTTTTTCCCCCTCTTTTTTCTTTT
CTTTTCTCCCTTTCTTTTCCTATTTCTCTATATATATTTTCCCTATTTCC
CCCTTTTCCTTTTTTTCCTCTTTTTCCCCCCCCTTTTTTCCTTCTTTTTT
TTTTTTTCCCCTTTTCTCCTCTCCCCTTTTTATTTCCTTTTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGATGACTGATGTTCTATTAACAG
TGAGCATGAAGTGTTCACAGACTACGCATCGTTTGCTGGTGTACCTCAAG
CAAAATATAGTCCTCTTCTACGTGTTTAATTTTTGTTGGCTTTTTTTTAC
AATTTTAATTTTTTTTTGAAAAAATTTATGTGTGTGTGTGTTTCTGTATG
TGTTTGCCTCCTTTGAGGAAGTATCAGTAATTTATAAGTTGGGAATTATC
CTTATCTGACAACAATCTTATTGAAAACATATACATAGTATCAACTTTGA
TGTATAACTTTACTCAATTATATTGGTGGGAATATTTCACCAAGACAAAG
AGGCAAAAGTGTACAATGCGTTTATATTGCTATTTCATACTCATACCCCA
CTTGTATCTTATACTTTCACCCTGAATCTTCTTCTCCATTTAATGTACAT
ATTTTGAATAGCTTTCCCTTTTTCGCCCCCTTTCTTTCCTTCCCCCCCTC
TCTCTCTCTTTCTTTACTCTTCCTCCTCCTTATCTATCTCTTTCTTCTTC
TTACTTATTCCACCTTTTTTCCTCCCCTCTTCCCCTTTTTTTTTGTCTTC
TCTTTCCCTTTTTTTTTTATTCTTTCTATTTCCCGCTCCCCTTTTTTTCT
TCTCTACCCCTTCCTTTTTTTTTTTATTTTCATACTACCATCTTACCCCC
TATTTTCATTTTCTTTTACCTTTATCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_p09.g1 MSMg01no341_p09.g1 CHROMAT_FILE:
MSMg01no341_p09.g1 PHD_FILE: MSMg01no341_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:21 2005
         (316 letters)



>mm_chr1_53474160_53474872
          Length = 713

 Score =  435 bits (225), Expect = e-126
 Identities = 293/319 (91%), Gaps = 10/319 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatgactgatgttctattaacagtgagcatga--agtgttcacagactacgcatcgttt 58
           |||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 194 tgatgactgacgttctattaacagtgagcatgagtagtgttcacagactacgcatcgttt 253

                                                                       
Query: 59  gctggtgtacctcaagcaaaata-tagtcctcttctacgtgtttaatttttgttggcttt 117
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 254 gctggtgtacctcaagcaaaataatagtcctcttctacgtgtttaatttttgttagcttt 313

                                                                       
Query: 118 ttttt----acaattttaatttttttttgaaaaaatttatgtgtgtgtgtgtttctgtat 173
           |||||    |||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 314 tttttttttacaattttaatttttttttgaaaaaagttatatgtgtgtgtgtttctgtat 373

                                                                       
Query: 174 gtgtttgcctcctttgaggaagtatcagtaatttataagttgggaattatccttatctga 233
           |||||||||| || ||| ||||||||||| |||||||||||  | |||||  || |||| 
Sbjct: 374 gtgtttgccttctatgaagaagtatcagtgatttataagttcagcattat--tt-tctgg 430

                                                                       
Query: 234 caacaatcttattgaaaacatatacatagtatcaactttgatgtataactttactcaatt 293
           |||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 431 caacaatcttaaagaaaacatatacatagtatcaactttgatgtataactttacccaatt 490

                              
Query: 294 atattggtgggaatatttc 312
           |||||||| ||||||||||
Sbjct: 491 atattggttggaatatttc 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 713
Length adjustment: 9
Effective length of query: 307
Effective length of database: 704
Effective search space:   216128
Effective search space used:   216128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)