Query= MSMg01no342_a12.b1 MSMg01no342_a12.b1 CHROMAT_FILE:
MSMg01no342_a12.b1 PHD_FILE: MSMg01no342_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:26 2005
(510 letters)
>mm_chr1_9921643_9922552
Length = 910
Score = 955 bits (494), Expect = 0.0
Identities = 506/510 (99%)
Strand = Plus / Plus
Query: 1 cattctttactgactgcatctcctgagccttagaaggctttactaaatatttaataaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattctttactgactgcatctcctgagccttagaaggctttactaaatatttaataaata 260
Query: 61 ctctgtaagaactttcttaaaaagttgctttccacaaattttgacatttttcccagaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgtaagaactttcttaaaaagttgctttccacaaattttgacatttttcccagaaat 320
Query: 121 tactttaaactgtagttaatactgaaataatcactagatagttaaatactagaatgatca 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactttaaactgtagttaatgctgaaataatcactagatagttaaatactagaatgatca 380
Query: 181 atttgtatttaactatttccggttacttagctgtgtgtcctacctctgtgtttgctgtag 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttgtatttaactatttctggttacttagctgtgtgtcctacctctgtgtttgctgtag 440
Query: 241 gattgctttttgattccagccaaccttgcagaggcatttggattactgattaactgcagt 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattgcagtttgattccagccaaccttgcagaggcatttggattactgattaactgcagt 500
Query: 301 gaggcatctccttgccacccacttcttcctactgtgcagcacactttaaagaaagcagtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggcatctccttgccacccacttcttcctactgtgcagcacactttaaagaaagcagtg 560
Query: 361 gagcctgaggggctgctgtacttagcgtctaagcagttcacaactgaagactttgaaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagcctgaggggctgctgtacttagcgtctaagcagttcacaactgaagactttgaaaag 620
Query: 421 gtaaagttagataaaatgattactcagaatgcctactcgtttctcaattatttattttta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtaaagttagataaaatgattactcagaatgcctactcgtttctcaattatttattttta 680
Query: 481 tctttacatttatttacttatttattcatt 510
||||||||||||||||||||||||||||||
Sbjct: 681 tctttacatttatttacttatttattcatt 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_a12.g1 MSMg01no342_a12.g1 CHROMAT_FILE:
MSMg01no342_a12.g1 PHD_FILE: MSMg01no342_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:26 2005
(480 letters)
>mm_chr1_10096659_10097537
Length = 879
Score = 841 bits (435), Expect = 0.0
Identities = 464/481 (96%), Gaps = 13/481 (2%)
Strand = Plus / Minus
Query: 1 atggaaagtcacatcaagacttgaaaattatgagaactttttcccctagaaacctgttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 atggaaagtcacatcaagacttgaaaattatgagaactttttcccctagaaacctgttct 483
Query: 61 ataaaggttcttttaaatctcggcactgtagaaaacactatcttttaccttaatttccct 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ataaaggttctcttaaatctcggcactgtagaaaacactatcttttaccttaatttccct 423
Query: 121 caaaatttgaatttttgtaacaactaaaggaaagaaatatggatgaaataaatcctttgg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 422 caaaatttgaatttttgtaacaactaaaggaaagaaatatggatgaaataaatcctttag 363
Query: 181 ggggagaacttttctcacaactacagggaactagtactattagaaaatagacatgtgact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ggggagaacttttctcacaactacagggaactagtactattagaaaatagacatgtgact 303
Query: 241 agataccttagtaaccacacaaaaacaactgaagccaaactagtattagatttcatagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 agataccttagtaaccacacaaaaacaactgaagccaaactagtattagatttcatagca 243
Query: 301 gttcacttaggagccataaggaaaaagaaaaaggaaaagaaaaagaaaacaaaacaaaca 360
||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 242 gttcacttaggagccataaggaaaaagaaaaag------------aaaacaaaacaaaca 195
Query: 361 ctaatagcctgagtcaggtagggcggcacacatctgtagtcccagcctcacaatgagaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ctaatagcctgagtcaggtagggcggcacacatctgtagtcccagcctcacaatgagaac 135
Query: 421 ctgtcccaggtcttaaccaaaagaaaaggggaa-ttgcgtactagggccaccaagactga 479
||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 134 ctgtcccagctcttaaccaaaagaaaaggggaaattgcgtactagggccaccgagactga 75
Query: 480 g 480
|
Sbjct: 74 g 74
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 879
Length adjustment: 10
Effective length of query: 470
Effective length of database: 869
Effective search space: 408430
Effective search space used: 408430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
