GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCATC
TGCACTCCACTTACAAGGCCACAGCTCTGCCTGTCTCTTAGGAAGACTGC
TACCACTCAGGACAAGCTGTTCGGCCAGCTTCACTGGAGAACTGATGAAA
ACCAGGACAATCAGAGGCTTGCTGCCACAAGGGACTACCAGCTCTACCTA
CAGTCCCAGAGACACTAGGAACTGCCAGGCCAGCCAATACCAGAGACAAC
CAGGTGACTAAAGGCCAGCGTGAGAACACAATCAACAAAAGGCAGGGCAA
CATGGCACCCTCAAAACCCAGCTCTCCATCTATAATAACCTGTGGGATAT
GCTAATATACCTGAAGAAAAAGACAATTACCTTAAATCCAATATTTTAAA
GTTTATGCAGGTCTTTAAAGAGGAAATATATACATCCCTTAACAAAACAA
AGGAAAACAAAATCAAAGTGATAGTGGTCTTCAAAGAGGAAAGAANAAAA
TTATAACGAANATACAGGAAAATACAATCATGCCGGTGAAGGAAATGAAT
AGAACTCTCCAAGACTTGAAAATGGAAATAGAATTAACAAAGAAAACATC
CAATGACAGCAATCCTGGAGATGAGAAACCTANGAAAGAGAAAAGGAACT
ACCGATGCCGGCCCCCGAAACGAATAACAGAGATGGGAGAGAGGATTTCC
GCCCAGAAGATTTTTTGGAAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGT
TATTTGATTTTCTGAAGTACATCTACACAATGGAGTACTACTCAGCAATT
AAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGG
CATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGT
ACTCACTGATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATA
AGATACAATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGT
GTGGACACTATGCCCCTCCTTAGAATTCGGAACAAAACACCCTTGGAAGG
AGTTACAGAGACAAAGTTTGGAGCTGAGATGAAAGGATGGTCCATGTAGA
GACTTCCATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACA
CCATTGCATACACTAGCAAGATTTTATCGAAAGGACCCAGATGTAGCTGT
CTCTTGTGAGACTATGCCGGGGNCTAGCAAACACAGAAGTGGATGCTCAC
AGTCCGCTAATGAATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAA
GTACCCCGGAACTTAAAGGGATTGCCAACCCCATTAGGGGAGCACATTTT
GAACTAACCGTTCCCCGGAGCTCTTTGTTTT

Query= MSMg01no342_b16.b1 MSMg01no342_b16.b1 CHROMAT_FILE:
MSMg01no342_b16.b1 PHD_FILE: MSMg01no342_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:32 2005
         (479 letters)



>mm_chr1_98936295_98937173
          Length = 879

 Score =  907 bits (469), Expect = 0.0
 Identities = 471/472 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcatctgcactccacttacaaggccacagctctgcctgtctcttaggaagact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcatctgcactccacttacaaggccacagctctgcctgtctcttaggaagact 264

                                                                       
Query: 65  gctaccactcaggacaagctgttcggccagcttcactggagaactgatgaaaaccaggac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctaccactcaggacaagctgttcggccagcttcactggagaactgatgaaaaccaggac 324

                                                                       
Query: 125 aatcagaggcttgctgccacaagggactaccagctctacctacagtcccagagacactag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatcagaggcttgctgccacaagggactaccagctctacctacagtcccagagacactag 384

                                                                       
Query: 185 gaactgccaggccagccaataccagagacaaccaggtgactaaaggccagcgtgagaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaactgccaggccagccaataccagagacaaccaggtgactaaaggccagcgtgagaaca 444

                                                                       
Query: 245 caatcaacaaaaggcagggcaacatggcaccctcaaaacccagctctccatctataataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caatcaacaaaaggcagggcaacatggcaccctcaaaacccagctctccatctataataa 504

                                                                       
Query: 305 cctgtgggatatgctaatatacctgaagaaaaagacaattaccttaaatccaatatttta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctgtgggatatgctaatatacctgaagaaaaagacaattaccttaaatccaatatttta 564

                                                                       
Query: 365 aagtttatgcaggtctttaaagaggaaatatatacatcccttaacaaaacaaaggaaaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagtttatgcaggtctttaaagaggaaatatatacatcccttaacaaaacaaaggaaaac 624

                                                               
Query: 425 aaaatcaaagtgatagtggtcttcaaagaggaaagaanaaaattataacgaa 476
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 625 aaaatcaaagtgatagtggtcttcaaagaggaaagaaaaaaattataacgaa 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)