Query= MSMg01no342_c23.b1 MSMg01no342_c23.b1 CHROMAT_FILE:
MSMg01no342_c23.b1 PHD_FILE: MSMg01no342_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:38 2005
(456 letters)
>mm_chr1_103641126_103641979
Length = 854
Score = 775 bits (401), Expect = 0.0
Identities = 442/457 (96%), Gaps = 4/457 (0%)
Strand = Plus / Minus
Query: 1 gagacagagagagagcgagagagagcgcaatattatagcaacaataaaaaaatccagaat 60
|||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 654 gagagagagagagagagagagagagagcaatattatagcaacaataaaaaaatccagaat 595
Query: 61 tctgcaattacagggaacattggttttcttcttgaggaacagtaaatccaggtttcagta 120
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 594 tctgcaattacagggaacattggttttcttcttgtggaacagtgaatccaggtttcagta 535
Query: 121 tccttttccatactaacgtctgcattagaggacaggttcttttccactatatagagcaaa 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 534 tccttttccatactaacgtctgcatttgaggacaggttcttttccactatatagagcaaa 475
Query: 181 actcatactaagccactcaactaaaaaaggttgttaacactggacctatatcacatttcc 240
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 474 actcaaactaagccactcaactaaaaaaggtt---aacactggacctatatcacatttcc 418
Query: 241 agccaaggaatgttttactaaagattttaatatttactttcgcagatatgtgtacttatt 300
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 417 agccaaggaatgttagactaaagatttttatatttactttcgcagatatgtgtacttatt 358
Query: 301 tctattatcaatctttaaacttggaagatagaaatgaattgcattacatttttgagtaaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 357 tctattatcaatctttaaacttggaagatagaaatgaattgcattacattattgagtaaa 298
Query: 361 agatttt-tttaaaataaagagaaatgtatctggaaaggaaatttgacagtagatgtttg 419
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 agattttgtttaaaataaagagaaatgtatctggaaaggaaatttgacagtagatgtttg 238
Query: 420 gactctgaagatacatatctttagtatttgaatgaat 456
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 gactctgaagatacatatctttagtatttgaatgaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 854
Length adjustment: 10
Effective length of query: 446
Effective length of database: 844
Effective search space: 376424
Effective search space used: 376424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_c23.g1 MSMg01no342_c23.g1 CHROMAT_FILE:
MSMg01no342_c23.g1 PHD_FILE: MSMg01no342_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:38 2005
(472 letters)
>mm_chr1_103483616_103484487
Length = 872
Score = 708 bits (366), Expect = 0.0
Identities = 449/480 (93%), Gaps = 11/480 (2%)
Strand = Plus / Plus
Query: 1 ctcccctcatctgctctcccatttgcctctgatagaatgtcccctataaattcatattta 60
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ctcccctcatctgccctccaatttgcctctgatagaatgtcccctataaattcatattta 255
Query: 61 ttaaacaaagcatgggtcc------aagttactcaaggacctcaacataaaaccagatac 114
||||||||||||||||||| |||||||| |||||||||||||||||| |||||||
Sbjct: 256 ttaaacaaagcatgggtccattgttaagttacttaaggacctcaacataaaatcagatac 315
Query: 115 actgaatctaatagaagagaaatcctgggagacagcctttactacattggtacaggagaa 174
|||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||
Sbjct: 316 actgaatctaatagaagagaaagcctgggagacagccttgactacattggtaaaggagaa 375
Query: 175 catttcctgaaaatgataccagtagctcaggctctaagatcagtacactttctgaatatc 234
||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||
Sbjct: 376 catttcctgaaaatgataccagtggctcaggctctaa-atcagtacacattctgaatat- 433
Query: 235 cctttcttt-tctttatttctttcttggtgtctaggaaagtagatttaaattttacattt 293
||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cctttttttatctttctttctttcttggtgtctaggaaagtagatttaaattttacattt 493
Query: 294 ctatctttcttgatatttgcctcttcataatttgtatgttcacctcactaaagcataaga 353
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 494 ctatctttattgatatttgcctcttcataatttgtatgttcacctcactaaaccataaga 553
Query: 354 tatgcataagatattctcatattatgcca-tctttttaaatttactgagttttatttatg 412
|||||||||||||| |||||||||| | | ||||||||||||||||| ||||||||||||
Sbjct: 554 tatgcataagatatcctcatattattc-agtctttttaaatttactgggttttatttatg 612
Query: 413 tacctcaaatttagtccattgttgaattggatattgggaactaattataagctattaatt 472
|||||||||||| |||||||||||| ||| || |||||||||||||||||||||||||||
Sbjct: 613 tacctcaaatttggtccattgttgacttgaatcttgggaactaattataagctattaatt 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
