Query= MSMg01no342_k04.b1 MSMg01no342_k04.b1 CHROMAT_FILE:
MSMg01no342_k04.b1 PHD_FILE: MSMg01no342_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:12 2005
(404 letters)
>mm_chr1_14611178_14611983
Length = 806
Score = 719 bits (372), Expect = 0.0
Identities = 394/406 (97%), Gaps = 10/406 (2%)
Strand = Plus / Minus
Query: 5 gaattcactagatcactcctgcctgggagactcaccagcacgtagtaagcaaaagctcct 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gaattcactagaccactcctgcctgggagactcaccagcacgtagtaagcaaaagctcct 547
Query: 65 ttgggagatttactgttatcactatcctcctgccaactgatctatctgccccttaggccc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttgggagatttactgttatcactatcctcctgccaactgatctatctgccccttaggccc 487
Query: 125 acaagagtttttcagaaattgttatacctatgaacagcaacattagtggtgccatgccct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 acaagagtttttcagaaattgttatacctatgaacagcaacattagtggtgccatgccct 427
Query: 185 atgatcgtgaagcttgtatgctggagagccaggacagttcgggagagatgcatcagcagc 244
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 atgatcgtgaagcttggatgctggagagccaggacagttcgggagagatgcatcagcagc 367
Query: 245 aaaggattcctgaagtagaaacagc----tttttgcaaccggaggccaagggcagagcat 300
||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 366 aaaggattcctgaagtagaaacagcaaag----tgcaaccggaggccaagggcagagcat 311
Query: 301 gagccacccctctttgtgagttactccaacattaaaggagtccctgccccatagaaatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gagccacccctctttgtgagttactccaacattaaaggagtccctgccccatagaaatat 251
Query: 361 ttatccgagaggg--aaaaaaaatgaacattttatgtttcatctgt 404
||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 250 ttatccgagaggggaaaaaaaaatgaacattttatgtttcatctgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 806
Length adjustment: 9
Effective length of query: 395
Effective length of database: 797
Effective search space: 314815
Effective search space used: 314815
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_k04.g1 MSMg01no342_k04.g1 CHROMAT_FILE:
MSMg01no342_k04.g1 PHD_FILE: MSMg01no342_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:12 2005
(431 letters)
>mm_chr1_14459582_14460412
Length = 831
Score = 652 bits (337), Expect = 0.0
Identities = 386/429 (89%), Gaps = 41/429 (9%)
Strand = Plus / Plus
Query: 1 attaaatttgcaggcagatgaatggaacttgtaaatgtcatcctgagtgaggtaacagtc 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 242 attaaatttgcaggcagatgaatggaacttgtaaatatcatcctgagtgaggtaacagtc 301
Query: 61 acaaaagaacacacagggtatgcattcactaataagtgggtattatcccaaaagtttgga 120
|||||||||||||||||||||||
Sbjct: 302 acaaaagaacacacagggtatgc------------------------------------- 324
Query: 121 ataaccaagattcaattcatagaccatatgaagcccaagaagagggaagaccaaagtgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ----ccaagattcaattcatagaccatatgaagcccaagaagagggaagaccaaagtgtg 380
Query: 181 gattcttctgtgcttcttaaaactggggacaaaatacaggaggaaatatggacacaaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattcttctgtgcttcttaaaactggggacaaaatacaggaggaaatatggacacaaagt 440
Query: 241 gtggagcagagaattgtaaacttgtaaatatgtatgtgagagtatgtacatatgtaagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggagcagagaattgtaaacttgtaaatatgtatgtgagagtatgtacatatgtaagac 500
Query: 301 tttgtgtatatgtgtgcctttagtatttatgattttcttttacaatgggttgagactatt 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 tttgtgtatatgtgtgcctttagtatttatgattttcttttaaaatgggttgagactatt 560
Query: 361 ataagaatttcagatctggccttccaaagtaatatcaaaatttaatccactgctatggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataagaatttcagatctggccttccaaagtaatatcaaaatttaatccactgctatggaa 620
Query: 421 tgaatcaac 429
|||||||||
Sbjct: 621 tgaatcaac 629
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space: 346884
Effective search space used: 346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
