XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGATC
TTTCCAGAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTT
TCTGCATCCAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTAT
ATAGTGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCATTC
CTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGATCT
TGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGATATTCAT
AAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTT
TAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGCAGAGTACTT
TCTACTTCTATCTTGTGAAAAAGTTTGTGCAGAACTGGAATTAGATCTTC
TTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTT
TTTTGGCTGGGAGACTATTTATAACTGCTTCTATTTCTTTAGGGGATATG
GGACTGTTTACAAAGGTAACTTGATCCTTGATCCACTTTGGTACCTGGTA
TTCTGTCCAAAATTTGTCCATTTCCCCCAGATTTCCAGTTTTGTTGAATA
TAACCTCTCTACAAATAAACTAGTTAGGTTTTGTATTTCTTATAGATCAT
TCTATTTCCC

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTTTGTCTTAAATCAGACTTTCTCCTT
CTCAGGCTTCCAAGGCCAACTGCATTGGGAAACATCTTTAGATCAGGCCC
AGAAGTGAGAGCTCAGGAGAAACTGTGTGGAATCTTTGGTTGGGTTACCC
TTTTTTTTTTTCTTTGTTTTTTTTTTTTTTGTAATTTAAGTGATATCCTG
TTTGGAGAGAAAAAGACAAAAATATAAGAAGTAAATACAACAGAATTTTC
CTTTGATTCCAGCTGTGTTCTACACTTGATGACATAAAGGAATTGCTCCA
AAAGGCTTTGCAGGAGCTCATTTTACATATTTATTCTCTACCAGAAATAG
AACAATCTTCACGAATAATTTTATTGATTATTTTAATAGTATTCCAATGT
AGTTTTCCCATTGGAAAAATATGATTTCCGAAGGTCATGTTTTTATTTTA
GTTTAATCATGTTTAACTAGAGGAATTCCAAGTTTTCCCCTAAAATGGAT
TTCATGATGTTGTGGACACATTTTGGTTTAAAAAAGAAATAAAGGATGGG
AACCTTGAAGAGAAAAAATCAAAACCCCTCACAGGGATTATTAATTGGGG
GAACCTGCTGAAAAAATGTGTTGGGCGGTTGGGAATTTTATAACCCCAAA
AAAATTATTCACCCCTTGGGAGTTGGAG

Query= MSMg01no343_a17.g1 MSMg01no343_a17.g1 CHROMAT_FILE:
MSMg01no343_a17.g1 PHD_FILE: MSMg01no343_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:43 2005
         (412 letters)



>mm_chr1_11136592_11137399
          Length = 808

 Score =  729 bits (377), Expect = 0.0
 Identities = 403/415 (97%), Gaps = 7/415 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttgtcttaaatcagactttctccttctcaggcttccaaggccaactgcattgggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 attttgtcttaaatcagactttctccttctcaggcttccaaggccaactgcattgggaaa 257

                                                                       
Query: 61  catctttagatcaggcccagaagtgagagctcaggagaaactgtgtggaatctttggttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 catctttagatcaggcccagaagtgagagctcaggagaaactgtgtggaatctttggttg 317

                                                                       
Query: 121 ggttacccttttttttt---ttctttgttttttttttttttgtaatttaagtgatatcct 177
           |||||||||||||||||   || ||| |||||||||||||||||||||||||||||||||
Sbjct: 318 ggttacccttttttttttccttgttttttttttttttttttgtaatttaagtgatatcct 377

                                                                       
Query: 178 gtttggagagaaaaagacaaaaatataagaagtaaatacaacagaattttcctttgattc 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtttggagagaaaaagacaaaaatataagaagtaaatacaacagaattttcctttgattc 437

                                                                       
Query: 238 cagctgtgttctacacttgatgacataaaggaattgctccaaaaggctttgcaggagctc 297
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cagctgtgttttacacttgatgacataaaggaattgctccaaaaggctttgcaggagctc 497

                                                                       
Query: 298 attttacatatttattctctaccagaaatagaacaatcttcacgaataattttattgatt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 attttacatatttattctctaccagaaatagaacaatcttcacgaataattttattgatt 557

                                                                  
Query: 358 attttaatagtattccaatgtagttttcccattggaaaaatatgatttccgaagg 412
           ||||||||||     |||||||||||||||| |||||||||||||||||||||||
Sbjct: 558 attttaatagg----caatgtagttttcccactggaaaaatatgatttccgaagg 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 808
Length adjustment: 9
Effective length of query: 403
Effective length of database: 799
Effective search space:   321997
Effective search space used:   321997
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)