BAC Information

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BAC

Clone NameMSMg01-343D04
Chromosome1 (Build37)
Map Location 149,276,697 - 149,277,053
singlet/doubletsinglet
Overlap genenone
Upstream geneB830045N13Rik, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343D04.T7 (MSMg01no343_d04.b1)MSMg01-343D04.TJ (MSMg01no343_d04.g1)
ACCAG456566AG456567
length769789
length of high quality
(start - end)
391 (39 - 429)252 (67 - 318)
definitionCHROMAT_FILE: MSMg01no343_d04.b1 PHD_FILE: MSMg01no343_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:56 2005CHROMAT_FILE: MSMg01no343_d04.g1 PHD_FILE: MSMg01no343_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGGATCCGCGGAATTCT
GTTTGACAATAAATGTTTCTAATAGATTTAAATGCTTATCAATTATGCGA
GTTTTAAAAAGTGTAGTCTTTCTTAGGTCTGAATTTTAAAAAAATCTTTT
AAGCTGAATATGGCAGTAAATGTCTTTAAACCCTTAGATATAGACAGAAA
GATCTAGGTTTAATGTCATCCTCACAGTGAGTTTGACTCCATGCTGATTT
CATAAATGAAATCCTGTCTCAATTCAAGCAAATTCAATTTTACAACCTAA
TAAAAATAATATATCATTGCACCTATAATTACATGGTATGAAGAGAGTAT
ACAGTGTGTTTCTAAATAGGATCAGGGAAATTTTTACGGCCATCGTTGAA
TCATGTTTCCTATGTATCTATCCTCAGGACAATTTGCCAGATGTAGCCTC
CTCTTCTCATACCTGAATTTTTTTCTCTGTTCGTATATTTCAAACTTTTC
TTTTTTGTCCTAACCTATTGCCTTTTACCCTTTCTGTACCCTTCTTCTCA
CACTTCCTTGGTGTCGACTATTCTTTTTTTTTTATCTATTTTTATGACCT
TTCCTACTTGATTTTAAAACATATCCTCCTTCCGCCTTTCCTGTTTATTA
TTTATATCTTAATCCTTCTTTTCTTTCTCCCTCTCCTTCTCCTTCTATTA
TCACCTTTTTTTATCATACGCCACACCATTCTCTCTCCACCCTCTTCCTT
TTACACTCTCATACTTACT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGAACTTTTCAGCTGGGGAACGAGAGTACCAGTG
AGTACAGCTTTACGAGGTAAGTCTGGTCTTGAACTTTCTAAGGAAATTCA
AGACAGTCTATCAGAAGTAAAGTGGAATATGTTTGGCCTTGAATTTTTTC
TGGTGTTAGGAGCCCTTTTGTTCCTTTTCACATGTTATCAAGTGATTAAG
ATAGGGCTGAAAATTCTAGAGGAAATTCAGGACAAGCTATCAGAAGTAAA
GTGGGGAGAGAGAGTAGGAACAAAGATGATATATGGCACACAAAATAAGT
ATACAGGCCTTTCCAAGGGTCTTGAACCCGAGTAAAAGTTATTGTTACGT
AGGAATACCTGTGAGACAGATTATTCTATCACTAGTATTATGGTTTTATA
TTATAGACTCCTTATTTCACTTCTCCTTTCCTACAGTACCCGTGTTTTCT
TTTTTGTATGTTCCCCCCCCCTTCCCTCTCTCTCGTTACTTTTTTTCCCC
ACTTTTTTTTTTTTCTCTTCTTTCTCTTATTTTTTTTGTCTTTCTCTCTC
TTTTTTGTCTTCTCTTTTCAAACCTATCTTTTTTTTTTATTATTATACCC
CCATTTTTCTTCCTCCCTTTCTCTCCTTCTTATCTCTTTTGTTCTTTTTT
TTTTTTCTCCCACCCTTTCATTCTTATCGCATACCCCATCTTTACTCTCT
CTTTTCTTCTCCTGCTCCTTTTTCTTCTCTCTTTTTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_d04.b1 MSMg01no343_d04.b1 CHROMAT_FILE:
MSMg01no343_d04.b1 PHD_FILE: MSMg01no343_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:56 2005
         (391 letters)



>mm_chr1_149276263_149277053
          Length = 791

 Score =  683 bits (353), Expect = 0.0
 Identities = 356/357 (99%)
 Strand = Plus / Minus

                                                                       
Query: 35  tagatttaaatgcttatcaattatgcgagttttaaaaagtgtagtctttcttaggtctga 94
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tagatttaaatgcttatcaattatgcgagttttaaaaagtgtagtctttcttaggtctga 732

                                                                       
Query: 95  attttaaaaaaatcttttaagctgaatatggcagtaaatgtctttaaacccttagatata 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 attttaaaaaaatcttttaagctgaatatggcagtaaatgtctttaaacccttagatata 672

                                                                       
Query: 155 gacagaaagatctaggtttaatgtcatcctcacagtgagtttgactccatgctgatttca 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gacagaaagatctaggtttaatgtcatcctcacagtgagtttgactccatgctgatttca 612

                                                                       
Query: 215 taaatgaaatcctgtctcaattcaagcaaattcaattttacaacctaataaaaataatat 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 taaatgaaatcctgtctcaattcaagcaaattcaattttacaacctaataaaaataatat 552

                                                                       
Query: 275 atcattgcacctataattacatggtatgaagagagtatacagtgtgtttctaaataggat 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 atcattgcacctataattacatggtatgaagagagtatacagtgtgtttctaaataggat 492

                                                                    
Query: 335 cagggaaatttttacggccatcgttgaatcatgtttcctatgtatctatcctcagga 391
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cagggaaatttttatggccatcgttgaatcatgtttcctatgtatctatcctcagga 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)