Query= MSMg01no343_d08.b1 MSMg01no343_d08.b1 CHROMAT_FILE:
MSMg01no343_d08.b1 PHD_FILE: MSMg01no343_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:57 2005
(376 letters)
>mm_chr1_107307089_107307861
Length = 773
Score = 565 bits (292), Expect = e-165
Identities = 351/372 (94%), Gaps = 3/372 (0%)
Strand = Plus / Minus
Query: 5 gaattctgaaagaggtgacttttaccgccattgatgattgatcatcatagttctatcatt 64
|||||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||||
Sbjct: 573 gaattctgaaagaggtcacttttaaagccattgacgattgattgtcatagttctatcatt 514
Query: 65 acacaaaagtttgctcagctgttccctgacatcagtgacagctacctagtcacttcttag 124
|||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||
Sbjct: 513 acacaaaagtttgctcagttgttccgtgacatcagtgacagctacctagttacttcttag 454
Query: 125 ttcctcacagttaggacctgtttaaatacccaggatttcaccaattggattcccattgtg 184
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttcctcacagttagggcctgcttaaatacccaggatttcaccaattggattcccattgtg 394
Query: 185 cacatttatgcatctgctgtatgccctgttagttggcaatagtatatgactttcatcaca 244
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 393 cacatttatgcatctgctgtataccctgttagttggcaatagtatgtgactttcatcaca 334
Query: 245 aacatgatgtctaccacgattttctcttctgctttgtgagtaacatttggtgattgattg 304
|||||| |||||||| || |||||||||||| |||||||||||||||||||||| |||
Sbjct: 333 aacatg---tctaccacaatcttctcttctgctctgtgagtaacatttggtgattgtttg 277
Query: 305 ctgcattcacactgatttaggaactgcccagtgggttcctataattcaatcattccttct 364
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 276 ctgcattcacactgatttaggaactgcccagtgggttgctataattcaatcattccttct 217
Query: 365 ttatttactact 376
||||||||||||
Sbjct: 216 ttatttactact 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 773
Length adjustment: 9
Effective length of query: 367
Effective length of database: 764
Effective search space: 280388
Effective search space used: 280388
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no343_d08.g1 MSMg01no343_d08.g1 CHROMAT_FILE:
MSMg01no343_d08.g1 PHD_FILE: MSMg01no343_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:57 2005
(306 letters)
>mm_chr1_107130170_107130875
Length = 706
Score = 561 bits (290), Expect = e-164
Identities = 302/306 (98%)
Strand = Plus / Plus
Query: 1 ttaaggaagatttgttctccctcagctcacctccaacattcaagatgtgcagcgtcttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaggaagatttgttctccctcagctcacctccaacattcaagatgtgcagcgtcttca 260
Query: 61 taaactcggcttcctttcagcacttgtatagatttattcccaatccatcagcatcagcag 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 taaactcggcttcctttcagcacttgtatagatttattcccaatccgtcagcatcagcag 320
Query: 121 gacactatctgttgtttttcaccttctggaaagcactctatctcaaacactgatgggtga 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 gacactatctgttgtttttcaccttctggaaagcactctatctcagacactgatgggtga 380
Query: 181 gacctgggctttttcaactgtctccagtccctcaagacttggacaccacattccctttac 240
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 gtcctgggctttttcaactgtctccagttcctcaagacttggacaccacattccctttac 440
Query: 241 tgagccagagtaatgctactcaaggtgtaaggctgggttggttaatggtccatcttattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagccagagtaatgctactcaaggtgtaaggctgggttggttaatggtccatcttattt 500
Query: 301 gacaaa 306
||||||
Sbjct: 501 gacaaa 506
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space: 207009
Effective search space used: 207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
