Query= MSMg01no343_d13.b1 MSMg01no343_d13.b1 CHROMAT_FILE:
MSMg01no343_d13.b1 PHD_FILE: MSMg01no343_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:58 2005
(441 letters)
>mm_chr1_88295753_88296590
Length = 838
Score = 685 bits (354), Expect = 0.0
Identities = 381/392 (97%), Gaps = 6/392 (1%)
Strand = Plus / Plus
Query: 53 acacacacacacacacacacacattgctcttaaccacggagccatccctccagcccctcc 112
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 253 acacacacatacacacacacatattgctcttaaccacggagccatccctccagcccctcc 312
Query: 113 ccacttctcctccttacttccctgttttctgaccctgttgctgtggttagggagaggaag 172
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 313 ccacttctcctccttacttccctgtattctgaccctgttgctgtggttagggagaggaag 372
Query: 173 aaacacaagataacaacattgtgtcatgcccagcaccacacagcaacttccatttataat 232
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaacacaagataaca---ttgtgtcatgcccagcaccacacagcaacttccatttataat 429
Query: 233 tttgttttgaacagggcctcacc--g-tgtagcccaggctggcctttagctcttaactat 289
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 430 tttgttttgaacagggcctcaccatgatgtagcccaggctggcctttagctcttaactat 489
Query: 290 ccctccaagggctggaattccaggcatgctataatcttggtgaattaacaattgttattg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ccctccaagggctggaattccaggcatgctataatcttggtgaattaacaattgttattg 549
Query: 350 ttaaggcctagatagaaaggtaaggtctaggtaactgttacctgtctagctgacattttg 409
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttaaggtctagatagaatggtaaggtctaggtaactgttacctgtctagctgacattttg 609
Query: 410 tgtgctgttactaatattataaggaaactttc 441
||||||||||||||||||||||||||||||||
Sbjct: 610 tgtgctgttactaatattataaggaaactttc 641
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 838
Length adjustment: 9
Effective length of query: 432
Effective length of database: 829
Effective search space: 358128
Effective search space used: 358128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no343_d13.g1 MSMg01no343_d13.g1 CHROMAT_FILE:
MSMg01no343_d13.g1 PHD_FILE: MSMg01no343_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:58 2005
(398 letters)
>mm_chr1_88468442_88469237
Length = 796
Score = 735 bits (380), Expect = 0.0
Identities = 393/398 (98%), Gaps = 2/398 (0%)
Strand = Plus / Minus
Query: 1 aaggccagcctggtttatgtagagaattccaggacagccagggctacatggaaaaatcct 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaggccagcctggtttacgtagagaattccaggacagccagggctacatggaaaaatcct 446
Query: 61 gcctgaaaaaaataagatgaagtaattgaaaatagaattaaaaccaatctttgacctcct 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 gcctgaaaaaaataagatgaagtaattgaaaatagaattaaaaccaatctctgacctcct 386
Query: 121 caagacttgtataagagagatgggaagaataacagagcacagcatggtaagtgcacagca 180
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 caagacttgtataagagagatgggaagaataac--agcacagcatggtaagtgcacagca 328
Query: 181 ttatcctaagtgcagtagaaatgcagagtgattactgctgggggcgttctggaaggcttc 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 327 ttatcctaagtgcagtagaaatgcagagtgattgctgctgggggcgttctggaaggcttc 268
Query: 241 agagttgtcatctaaatagagtcttgaaagatgagtaggtgttaaggagtctaatcttta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agagttgtcatctaaatagagtcttgaaagatgagtaggtgttaaggagtctaatcttta 208
Query: 301 gatactggggagtagcagcaacacgatggcaggcacagtgcagaggagcatttcgggcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gatactggggagtagcagcaacacgatggcaggcacagtgcagaggagcatttcgggcat 148
Query: 361 gagctggagccaagcaaaggagcctagagatcaaaagt 398
||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gagctggagccaagcaaaggagcctagagatcaaaagt 110
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 796
Length adjustment: 9
Effective length of query: 389
Effective length of database: 787
Effective search space: 306143
Effective search space used: 306143
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
