BAC Information

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BAC

Clone NameMSMg01-343D17
Chromosome1 (Build37)
Map Location 67,256,469 - 67,256,793
singlet/doubletsinglet
Overlap geneCps1
Upstream geneMtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1
Downstream geneKif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343D17.T7 (MSMg01no343_d17.b1)MSMg01-343D17.TJ (MSMg01no343_d17.g1)
ACCAG456592AG456593
length772789
length of high quality
(start - end)		483 (32 - 514)325 (65 - 389)
definitionCHROMAT_FILE: MSMg01no343_d17.b1 PHD_FILE: MSMg01no343_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:59 2005CHROMAT_FILE: MSMg01no343_d17.g1 PHD_FILE: MSMg01no343_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTTGTGAT
TGGGTTATCTCACTCAGGATGATAGCCTCCAGATACATCCATTTGCCCAA
GAATTTCATAAATACATTGTATTTAATAACTGAGTAGTACTCCATTGTGT
AAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGAACATCTGGGT
TCTTTCAAGCTTCTGGCTATCATAAATAGGGCTGCTATGAACATAGTGGA
GCATGTGTCCTTATTACCAGTTGGAAAATCTTCCCCAAGAGAGGTATTGC
TGGATCTACCGGTAGTACTATGTCCAGTTTTCTGAGGAACCGCCAGACTG
ATTTCCAGAGTAGTTGTACAAGCTTGCAATCCCACCAGCAATGGAGGAGT
GTTCCTGTTTCTTCACATCCTTGCCAGCGTCTTCTGTCACCTGAGTTTTT
GATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTAA
TTTGCATTTACCTGCATTTCTAAAGATGTTGCACATTTTTTCAAGTGCTT
CTCACCCATTCAGTATTCCTCAGTTGGAAAATTCTTTGTTTAGTTCCGGA
CCCCCTTTTTTTATGGAAATATTTGAATTTCCGGAATTCATTCCTCTTCA
CTTCTTTGATTAACATTGGGACATATTCCCCCTAACCCATTTCTGATTTG
TCGGAACTTTTTTCTTCCCTTCCTGGTGTTCCTCTCTTTTTTTTTTATTT
TAACCCTCTTCTCTGCCCTTTG

GGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGTTCTGTTGCCTTTATTAATCCAATGAAAAGGAGA
GGAGATAGTGGGAAACAAGAGAAGAAAAATCAGAGGCTCAATTAGAAATC
TTAGAAAGCAAAGTGTTTGGGTGTTTTTATAACACTCGCTAAAACATAAA
AGGAAAGCCACAGACAAAGGAAAATGAGAACGAAAGATCTATTCAAGAAG
GAGGAGTGGGGTTTGGTAATTGATACTGAACATCATCAAAGAGAAAGGCT
GACAGTCCGAAAGGCAAGGAATACGATACCCATGAGAAGTCAACTCAATC
TTCAGAGACTTTGAGAGTTGGCCTTCAGGGTTTTGTGTTGTTTTTGTTTG
TTTTGNNNGNNNNNTTTTNNNNTNNNTTNTNNTTTTTTTTNTTTTTTTTT
TTTTNTNNTNNTNNNNTTTNNNNTNNNNTTNNNNTTTNTTTNTNNNTTTT
NTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTT
TNNTTTTTTTTTTTTTTTNNNTTTNNNNTTTTTNTTTTTTTTTTTTTTNT
TTNNTTTTTTTTNNNTTNTTNNTTTTNTTTTTTTTTTTTTTTTTTTTTTT
TTTNNTTTTTTTNNNTTTTTTTTTTTTTNTTNTTTTTTNTTTTTNTNTTT
TNNNTTTNTNNTTTTNTTNTTTTTTTNTTTNTTNTTTTTTTTTTTNTTTT
TTTTTTTTTCCNTTCTCTTTTTTTTTTCNNNTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_d17.g1 MSMg01no343_d17.g1 CHROMAT_FILE:
MSMg01no343_d17.g1 PHD_FILE: MSMg01no343_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:59 2005
         (325 letters)



>mm_chr1_67256269_67256993
          Length = 725

 Score =  629 bits (325), Expect = 0.0
 Identities = 325/325 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttctgttgcctttattaatccaatgaaaaggagaggagatagtgggaaacaagagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tgttctgttgcctttattaatccaatgaaaaggagaggagatagtgggaaacaagagaag 466

                                                                       
Query: 61  aaaaatcagaggctcaattagaaatcttagaaagcaaagtgtttgggtgtttttataaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aaaaatcagaggctcaattagaaatcttagaaagcaaagtgtttgggtgtttttataaca 406

                                                                       
Query: 121 ctcgctaaaacataaaaggaaagccacagacaaaggaaaatgagaacgaaagatctattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ctcgctaaaacataaaaggaaagccacagacaaaggaaaatgagaacgaaagatctattc 346

                                                                       
Query: 181 aagaaggaggagtggggtttggtaattgatactgaacatcatcaaagagaaaggctgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aagaaggaggagtggggtttggtaattgatactgaacatcatcaaagagaaaggctgaca 286

                                                                       
Query: 241 gtccgaaaggcaaggaatacgatacccatgagaagtcaactcaatcttcagagactttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gtccgaaaggcaaggaatacgatacccatgagaagtcaactcaatcttcagagactttga 226

                                    
Query: 301 gagttggccttcagggttttgtgtt 325
           |||||||||||||||||||||||||
Sbjct: 225 gagttggccttcagggttttgtgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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