TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTACAAGTCTCCTTCCCAGATATGAAAATTCACTACTCAGTGTTGGCTTT
CTTCCTGGAATCAAGATACTGACATTTTTATAAAGTTTCAGCATTGTGAC
AACTGTAACTCTCAGACAACAGACACATAAGAGATCCCCCGAGAATGTAA
TAACTTTACAGGGAAGCTCAGAGAAACAAAGAACATCTTTTTGAAAGGAA
TCATATTGTCTGCACTGTAAACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACAGGAATGCTTAGTGTACCAA
GTCACTTACATTCCTCTTAATGCTGAAGGATGAACTCAAGTAAGAGTTGA
GGGAACTGACCCTGGTATGAAATCCTAACTCTCTCCTGTACAAAGCAGCA
CAGAACTCTGATATAAAATACCAGTCCTACCTCCTGATACTGAAGTTAGC
AATTTTTGTTTAAAAAGAAAAATTGAGTGGGAACCCACTTAAATGGTAAA
GAGAAGCTCAAGACTGTATGATAAATATTATGAAATAAACCTGGCCTCTG
GTCCTCCACATAATTTTATTTTTTGACATTGAAGGACTATTGATCCCGAT
TTATTGGTGCAATTCCCTTTTATCATCCTCAACTTCTTTTTCTCCTTTTT
CTGTTTTCTAAAATTN

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTAAAGGCTCAAAAGCTGAAGTGCCCAAGT
GAGGACACCTCAGTCCCACTTGGGAGAGAGAAGAAAGCAATCACAAATGG
GGAGGGAGGGAGGGATTTGGTCTTTTTTTTTTTTTTNTTTTTTTTTCTTT
TTTTTTTTTTTTTCTTTTTTTTTTCCCTTTTTTTCCTTTTCTCCTTTTTT
CTTTTTCTTTTTCTTCTTTTTTCTCTTCTCTTCTTTCCTTTTCTTTTTTT
TTTCCTCCTCCCCTTTTTTTTTCCTCTTTTTTTTTTCCTCTCTTCTTCTT
CTTTTTTTTTTTTTTTCTTCTTCTCTTTCTCTTTTCTTTCTTTTTTTTTC
TCCCCTCTTTTCTTTTTTCTTTTTTTTCTTTTTTCTTCTCCCCTCTCTTC
TTTTCCTTTTTCTTCTTTCCCTCTCTCCCTTTTTTTCTTTCTCCTATCCT
TCTCTCTTTTTTTCTCTCTTTTCTTTTTTTTTTTTTTTTCCCCCCTCCTT
CTCTCTTTTTTTTTTTTTCTCTTTCTTCCCCCCTCTTTTTCTTTTTTCTT
CTTTCCTTTTCCTTTCCTTTTCTTCTTCTCCTCTTCTTTCCTTTTTTTTT
CTTCTCTTCTCTCTCCCCTTTTCTTTTCTTTTTTTTTTTTCTCCTCCCTT
TTTTTTCCCTTCTCTCTTTCTTCTCTTTTTTTCTCTCCTTTTCCCTTTTT
TCTCTTCTCTCCTCTTCCTTTCTTTTCTTTGTTCTTTCCTCTTTTTTTTT
TTCTCTTTTCTTTTCTCCCCCTCTTTTCTTTTTTTCTTTTCTG

Query= MSMg01no343_f02.b1 MSMg01no343_f02.b1 CHROMAT_FILE:
MSMg01no343_f02.b1 PHD_FILE: MSMg01no343_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:06 2005
         (472 letters)



>mm_chr1_98173271_98174142
          Length = 872

 Score =  789 bits (408), Expect = 0.0
 Identities = 448/466 (96%), Gaps = 8/466 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctacaagtctccttcccagatatgaaaattcactactcagtgttggctttcttcc 64
           |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 205 gaattctacaagtctccttcccagatatgagaattcattactcagtgttggctttcttcc 264

                                                                       
Query: 65  tggaatcaagatactgacatttttataaagtttcagcattgtgacaactgtaactctcag 124
           ||||||||| | |||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 265 tggaatcaaaacactgacatttgtataaagttacagcattgtgacaactgtaactctcag 324

                                                                       
Query: 125 acaacagacacataagagatcccccgagaatgtaataactttacagggaagctcagagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaacagacacataagagatcccccgagaatgtaataactttacagggaagctcagagaa 384

                                                                       
Query: 185 acaaagaacatctttttgaaaggaatcatattgtctgcactgtaaacacacacacacaca 244
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 385 acaaagaacatctttttgaaaggaatcttattgtctgcactgtaaacacacacacacaca 444

                                                                       
Query: 245 cacacacacacacacacacacacacacacacacacacacacacacaggaatgcttagtgt 304
           |||||||||||||||||||||||||||||||||||||||        |||||||||||||
Sbjct: 445 cacacacacacacacacacacacacacacacacacacac--------gaatgcttagtgt 496

                                                                       
Query: 305 accaagtcacttacattcctcttaatgctgaaggatgaactcaagtaagagttgagggaa 364
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 497 accaagtcacttacattcctcttaatgctgaaggatgaaatcaagtaagagttgagggaa 556

                                                                       
Query: 365 ctgaccctggtatgaaatcctaactctctcctgtacaaagcagcacagaactctgatata 424
           |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 557 ctgaccctggcatgaaatcctaactctctcctgtgcaaagcagcacagaactctgatata 616

                                                         
Query: 425 aaataccagtcctacctcctgatactgaagttagcaatttttgttt 470
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaataccagtcctacctcctgatactgaagttagcaatttttgttt 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)